Explore Workflows
View already parsed workflows here or click here to add your own
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example.cwl
Example CWL workflow that uses some advanced features |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/example.cwl Branch/Commit ID: 2a88d5c2d139ff817b21b480ccf9c1cd7139b00c |
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Per-chromosome pindel
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_cat.cwl Branch/Commit ID: ffab5424bb8b5905aecf6f8e2e6387da7f3df562 |
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bam to trimmed fastqs and HISAT alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_hisat_alignments.cwl Branch/Commit ID: ae79bc51e8b502164dbe74ea3b068d6d4d36a1f8 |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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TransDecoder 2 step workflow, running TransDecoder.LongOrfs (step 1) followed by TransDecoder.Predict (step2)
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/TransDecoder-v5-wf-2steps.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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PGAP Pipeline
PGAP pipeline for external usage, powered via containers |
https://github.com/ncbi/pgap.git
Path: wf_common.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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Identifies non-coding RNAs using Rfams covariance models
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https://github.com/EBI-Metagenomics/workflow-is-cwl.git
Path: workflows/cmsearch-multimodel-wf.cwl Branch/Commit ID: 11cba46ea263315d4d66e86819718fa157e927b1 |
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waltz_workflow_all_bams.cwl
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https://github.com/mskcc/ACCESS-Pipeline.git
Path: workflows/waltz/waltz_workflow_all_bams.cwl Branch/Commit ID: f09502839916ff50bdd7e1b69f2fc4f17c8416b4 |
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bacterial_orthology
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
