Explore Workflows

DAT2-cwl bacteria genome data analysis workflow. see https://github.com/pitagora-network/DAT2-cwl/blob/main/workflow/bacteria-genome/README.md

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/bacteria-genome/bacteria-genome.cwl

Branch/Commit ID: main

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/image_workflow.cwl

Branch/Commit ID: master

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

Branch/Commit ID: master

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: master

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/fastqc-0-11-4-1.cwl

Branch/Commit ID: dev2

https://github.com/ljdursi/cwl-tutorial.git

Path: bioinformatics/tools/workflow.cwl

Branch/Commit ID: master

https://github.com/hubmapconsortium/ome-tiff-pyramid.git

Path: pipeline.cwl

Branch/Commit ID: b1b40c4

STARR-seq pipeline - reads: PE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/STARR-seq_pipeline/pipeline-pe.cwl

Branch/Commit ID: master

\"Subworkflow for Metagenome Annotation This subworkflow is for annotation of predicted protein coding sequences. \"

https://github.com/RyoMameda/workflow_cwl.git

Path: Workflow/annotation_sw.cwl

Branch/Commit ID: main

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-pipeline-v3-paired.cwl

Branch/Commit ID: d3b8e45