Explore Workflows

View already parsed workflows here or click here to add your own

Graph	Name	Retrieved From	View
	picard_markduplicates Mark duplicates	https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.0.9
	cram_to_bam workflow	https://github.com/tmooney/cancer-genomics-workflow.git Path: definitions/subworkflows/cram_to_bam_and_index.cwl Branch/Commit ID: downsample_and_recall
	exome alignment and tumor-only variant detection	https://github.com/genome/analysis-workflows.git Path: definitions/pipelines/tumor_only_exome.cwl Branch/Commit ID: master
	canine_bcftools_annotate_module.cwl	https://github.com/d3b-center/canine-dev.git Path: subworkflows/canine_bcftools_annotate_module.cwl Branch/Commit ID: master
	Add snv and indel bam-readcount files to a vcf	https://github.com/apaul7/cancer-genomics-workflow.git Path: definitions/subworkflows/vcf_readcount_annotator.cwl Branch/Commit ID: low-vaf
	checker-workflow-wrapping-workflow.cwl	https://github.com/ICGC-TCGA-PanCancer/Seqware-BWA-Workflow.git Path: checker-workflow-wrapping-workflow.cwl Branch/Commit ID: 2.6.8_1.4
	count-lines1-wf.cwl	https://github.com/common-workflow-language/cwl-v1.1.git Path: tests/count-lines1-wf.cwl Branch/Commit ID: master
	kf-cram2gvcf_calc_contam.cwl	https://github.com/cr-ste-justine/chujs-alignment-workflow.git Path: workflows/kf-cram2gvcf_calc_contam.cwl Branch/Commit ID: dev
	pcawg_minibam_wf.cwl This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json `	https://github.com/ICGC-TCGA-PanCancer/pcawg-minibam.git Path: pcawg_minibam_wf.cwl Branch/Commit ID: master
	step_valuefrom5_wf_v1_2.cwl	https://github.com/common-workflow-language/cwl-utils.git Path: testdata/step_valuefrom5_wf_v1_2.cwl Branch/Commit ID: main

First
«
79
80
81
82
83
84
85
»
Last