Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph samples_fillout_index_workflow.cwl

Wrapper to run indexing on all bams before submitting for samples fillout Includes secondary input channels to allow for including .bam files that do not have indexes Also include other extra handling needed for files that might not meet needs for the fillout workflow

https://github.com/mskcc/pluto-cwl.git

Path: cwl/samples_fillout_index_workflow.cwl

Branch/Commit ID: 45604eaeea15030c7302941c761464ce392abf74
workflow graph workflow_input_format_expr_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_2.cwl

Branch/Commit ID: 18a3e768e1eda9bdc63d73ff8336a342e04e7a63
workflow graph sec-wf-out.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/sec-wf-out.cwl

Branch/Commit ID: 0b3846fbf866584870a0b1ce902b5574f549dfee
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: 3bd060365f24a480b04951a3a75da807d42f010f
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/exome.cwl

Branch/Commit ID: 195b4ab487c939eb32a55d9f78bc1befd100caae
workflow graph gathered exome alignment and somatic variant detection for cle purpose

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/gathered_cle_somatic_exome.cwl

Branch/Commit ID: ad65dc1dfff9afa5077f498b85e699716c47f6cb
workflow graph directory.cwl

Inspect provided directory and return filenames. Generate a new directory and return it (including content).

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/directory.cwl

Branch/Commit ID: 20bec583996f86de518feb51574ff6efc8784f49
workflow graph trick_revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/trick_revsort.cwl

Branch/Commit ID: 18b8fdf7d425d8e7d8986e08904ef09492798cf6
workflow graph trick_revsort.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/trick_revsort.cwl

Branch/Commit ID: d5f7fa162611243f0c66dd3e933c16a4964a09ca