Explore Workflows
View already parsed workflows here or click here to add your own
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Single-cell Format Transform
Single-cell Format Transform Transforms single-cell sequencing data formats into Cell Ranger like output. |
https://github.com/datirium/workflows.git
Path: workflows/sc-format-transform.cwl Branch/Commit ID: 675a3ff982091faf304931e9261aacdbabf51702 |
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rnaseq-pe-dutp.cwl
Runs RNA-Seq BioWardrobe basic analysis with strand specific pair-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/rnaseq-pe-dutp.cwl Branch/Commit ID: 64e85970dbecba89c3380ab285c108d221e76fe6 |
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group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/Barski-lab/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 0d919fc3a2f4e4c105142df04d74ac934e3c8c03 |
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Salmon quantification, FASTQ -> H5AD count matrix
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: steps/salmon-quantification.cwl Branch/Commit ID: a9022e73a8a0f01685b1241b87d5e793250845fd |
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count-lines8-wf-noET.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines8-wf-noET.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
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count-lines15-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/count-lines15-wf.cwl Branch/Commit ID: a5073143db4155e05df8d2e7eb59d9e62acd65a5 |
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gwas.cwl
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https://github.com/common-workflow-lab/wdl-cwl-translator.git
Path: wdl2cwl/tests/cwl_files/gwas.cwl Branch/Commit ID: 0a8c54b014101112fa4a2cb5fce5c30133691cae |
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scatter-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/scatter-wf1.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
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step-valuefrom3-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom3-wf.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
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output-arrays-file-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/output-arrays-file-wf.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
