Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph access_qc.cwl

https://github.com/msk-access/qc_generation.git

Path: access_qc.cwl

Branch/Commit ID: develop
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: master
workflow graph steps.cwl

https://github.com/DimitraPanou/scRNAseq-cwl.git

Path: steps.cwl

Branch/Commit ID: b8e641c
workflow graph ChIP-exo peak caller workflow for single-end samples

This workflow execute peak caller and QC from ChIP-exo for single-end samples

 https://gitlab.com/r78v10a07/cwl-workflow.git

Path: workflows/ChIP-exo/peak_caller-SE.cwl

Branch/Commit ID: master
workflow graph epigenome-chip-seq.cwl

https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/epigenome-chip-seq/epigenome-chip-seq.cwl

Branch/Commit ID: main
workflow graph bacteria-genome.cwl

DAT2-cwl bacteria genome data analysis workflow. see https://github.com/pitagora-network/DAT2-cwl/blob/main/workflow/bacteria-genome/README.md

 https://github.com/pitagora-network/DAT2-cwl.git

Path: workflow/bacteria-genome/bacteria-genome.cwl

Branch/Commit ID: main
workflow graph image_workflow.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/image_workflow.cwl

Branch/Commit ID: master
workflow graph gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: gatk4-mutect2-tumor-only-cwl/gpas_gatk4.2.4.1_mutect2_tumor_only_workflow.cwl

Branch/Commit ID: master
workflow graph PGAP Pipeline, simple user input, PGAPX-134

PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template)

https://github.com/ncbi/pgap.git

Path: pgap.cwl

Branch/Commit ID: master
workflow graph fastqc-0-11-4-1.cwl

https://github.com/mr-c/4dn-dcic-pipelines-cwl.git

Path: cwl_awsem_v1/fastqc-0-11-4-1.cwl

Branch/Commit ID: dev2