Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome_nonhuman.cwl Branch/Commit ID: master |
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workflow_simple.cwl
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https://github.com/FarahZKhan/scalability-reproducibility-chapter.git
Path: CWL/workflow_simple.cwl Branch/Commit ID: ProvCaptureDemo |
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Metagenomics workflow
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL) |
https://git.wageningenur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_metagenomics_assembly.cwl Branch/Commit ID: master |
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workflow-blast-clustalo-phylogeny.cwl
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https://github.com/ebi-wp/webservice-cwl.git
Path: workflows/workflow-blast-clustalo-phylogeny.cwl Branch/Commit ID: master |
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EMG assembly for paired end Illumina
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https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git
Path: workflows/emg-assembly.cwl Branch/Commit ID: 5833078 |
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hc-distr.cwl
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https://github.com/sentieon/sentieon-cwl.git
Path: stage/hc-distr.cwl Branch/Commit ID: master |
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tRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/tRNA_selection.cwl Branch/Commit ID: 0cf06f1 |
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workflow.cwl
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https://github.com/nal-i5k/organism_onboarding.git
Path: flow_download/workflow.cwl Branch/Commit ID: master |
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spurious_annot pass2
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https://github.com/ncbi/pgap.git
Path: spurious_annot/wf_spurious_annot_pass2.cwl Branch/Commit ID: master |
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rest_parallel.cwl
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https://github.com/anandanlk/community_based_fl.git
Path: decentralised_fl/CWL_Workflow/rest_parallel.cwl Branch/Commit ID: master |
