Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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io-int-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-int-wf.cwl Branch/Commit ID: master |
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Metagenomics workflow
Workflow for Metagenomics from raw reads to annotated bins. Steps: - workflow_illumina_quality.cwl: - FastQC (control) - fastp (quality trimming) - kraken2 (taxonomy) - bbmap contamination filter - SPAdes (Assembly) - QUAST (Assembly quality report) - BBmap (Read mapping to assembly) - Contig binning (OPTIONAL) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_metagenomics_assembly.cwl Branch/Commit ID: master |
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hi-c-processing-pairs.cwl
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https://github.com/4dn-dcic/pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-pairs.cwl Branch/Commit ID: dev2 |
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Workflow that executes the Sounder SIPS end-to-end L1a processing
Cognito credentials to access the U-DS services are retrieved from the AWS Parameter Store with the supplied keys. |
https://github.com/unity-sds/unity-sps-workflows.git
Path: sounder_sips/ssips_L1a_workflow.cwl Branch/Commit ID: main |
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picard_markduplicates
Mark duplicates |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/picard_markduplicates.cwl Branch/Commit ID: 1.0.5 |
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scatter-valuefrom-wf1.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/scatter-valuefrom-wf1.cwl Branch/Commit ID: master |
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star_samtools_stringtie_prepDE_DESeq2.cwl
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https://github.com/rawgene/cwl.git
Path: workflows/star_samtools_stringtie_prepDE_DESeq2.cwl Branch/Commit ID: master |
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5S-from-tablehits.cwl
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https://github.com/proteinswebteam/ebi-metagenomics-cwl.git
Path: tools/5S-from-tablehits.cwl Branch/Commit ID: 5dc7c5c |
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Runs InterProScan on batches of sequences to retrieve functional annotations.
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https://github.com/hmenager/workflow-is-cwl.git
Path: workflows/InterProScan-v5-chunked-wf.cwl Branch/Commit ID: master |
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EMG core analysis for Illumina
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-core-analysis-v4.cwl Branch/Commit ID: 1b0851e |
