Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/germline_filter_vcf.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525 |
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scatter GATK HaplotypeCaller over intervals
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/gatk_haplotypecaller_iterator.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525 |
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packed_no_main.cwl#collision
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/packed_no_main.cwl Branch/Commit ID: ca7f7687b39611c295dc9d21c542214f2b462093 Packed ID: collision |
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Whole genome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_wgs.cwl Branch/Commit ID: f42c889734c8f709ad2fd9090493bcaac8326c98 |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: f21b6c6f70f01d0fe08193684060161107f0bf59 |
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mut.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/mut.cwl Branch/Commit ID: 0209b0b7ce66f03c8498b5a686f8d31690a2acb3 |
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facets-suite-workflow.cwl
Workflow for running the facets suite workflow on a single tumor normal pair Includes handling of errors in case execution fails for the sample pair |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/facets-suite-workflow.cwl Branch/Commit ID: 2a88d5c2d139ff817b21b480ccf9c1cd7139b00c |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3 |
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samples_fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of samples, each with their own bam and maf files |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/samples_fillout_workflow.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13 |
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tt_univec_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_univec_wnode.cwl Branch/Commit ID: 3a89a217ca75ec042ce3a11ebb6d1664a3ec6e7e |
