Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph input_bam_processing_workflow.cwl

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/preprocessing/input_bam_processing_workflow.cwl

Branch/Commit ID: master
workflow graph wf_trim_partial_and_map_se.cwl

This workflow takes in appropriate trimming params and demultiplexed reads, and performs the following steps in order: trimx1, trimx2, fastq-sort, filter repeat elements, fastq-sort, genomic mapping, sort alignment, index alignment, namesort, PCR dedup, sort alignment, index alignment

https://github.com/YeoLab/eclip.git

Path: cwl/wf_trim_partial_and_map_se.cwl

Branch/Commit ID: master
workflow graph echo-workflow.cwl

https://github.com/BiodataAnalysisGroup/intro-to-cwl-docker.git

Path: _includes/cwl/echo-workflow.cwl

Branch/Commit ID: gh-pages
workflow graph process VCF workflow

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/strelka_process_vcf.cwl

Branch/Commit ID: master
workflow graph panel of normals workflow

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: panel_of_normals/workflow.cwl

Branch/Commit ID: master
workflow graph exome alignment and germline variant detection

https://github.com/litd/analysis-workflows.git

Path: definitions/subworkflows/germline_detect_variants.cwl

Branch/Commit ID: master
workflow graph pipeline-pe.cwl

ATAC-seq pipeline - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe.cwl

Branch/Commit ID: master
workflow graph EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: workflows/emg-qc-paired.cwl

Branch/Commit ID: 3f85843
workflow graph Find reads with predicted coding sequences above 60 AA in length

https://github.com/EBI-Metagenomics/ebi-metagenomics-cwl.git

Path: workflows/orf_prediction.cwl

Branch/Commit ID: master
workflow graph WF6101.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: WF6101.cwl

Branch/Commit ID: manuela