Explore Workflows

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/count-lines9-wf.cwl

Branch/Commit ID: e62a8406b448220969ee172699f61c5ca379d60c

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/wgs_alignment.cwl

Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/conflict-wf.cwl

Branch/Commit ID: e2ec740fccc81ff7071dcd607c5c158fbc0dfb90

Packed ID: collision

https://github.com/ncbi/pgap.git

Path: task_types/tt_univec_wnode.cwl

Branch/Commit ID: 8aa85573e659ef67163537d6811afdddcfad53dc

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/count-lines11-null-step-wf.cwl

Branch/Commit ID: 6397014050177074c9ccd0d771577f7fa9f728a3

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: e4d6182d5f7a6a880e5f2b21273cf40d25e187df

Camera calibration data (from telescope-level calibration events) will be recorded alongside science data during and around each observation night by ACADA. Different calibration event types will be recorded to the different streams at this stage. Interleaved flat-field and sky pedestal events are tagged at the telescope level, allowing the data to directly align with the functional decomposition of the CalibPipe and avoid the need of additional event-type filtering. Following this, pixel- and channel-wise camera calibration coefficients are calculated as a function of time. This process includes the computation of aggregated time-series statistics for the calibration events, as well as the detection of non-nominal pixels and time periods (UC-120-2.21). The aggregated statistics are further processed to derive the sky pedestal offsets per waveform sample, flat-fielding coefficients, and pixel timing corrections. Additionally, the CalibPipe calculates the absolute gain for each pixel and gain channel as a function of time. This process will ultimately yield a multiplicative coefficient for the absolute calibration of extracted charge into photoelectrons. To achieve accurate absolute gain and charge calibration, CalibPipe derives telescope-specific systematic corrections (UC-120-2.22) and the conversion factors from digital counts to single photoelectrons (UC-120-2.23).

https://gitlab.cta-observatory.org/cta-computing/dpps/calibrationpipeline/calibpipe.git

Path: workflows/telescope/camera/uc-120-2.20-perform-camera-calibration.cwl

Branch/Commit ID: 0ef4c7080b3137b590a437b811fba3c6c2556494

This workflow detect and remove vectors from a DNA fasta file

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/vector-cleanup.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_cram_reheader_wf.cwl

Branch/Commit ID: b6d3cf83b57011983fb848c7178017e07b94c270

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq_star_fusion.cwl

Branch/Commit ID: d57c2af01a3cb6016e5a264f60641eafd2e5aa05