Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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blastp_wnode_struct
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 4c38ec433fd6fcbbe2ab659c97db729665864023 |
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bam_readcount workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_readcount.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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retrieve sequence and perform pairwise alignment (sub-workflow process)
\"Perform pairwise alignment of protein sequences for pairs identified by structural similarity search. Step 1: retrieve sequence from blastdbcmd result Step 2: makeblastdb: ../Tools/14_makeblastdb.cwl Step 3: blastdbcmd: ../Tools/15_blastdbcmd.cwl Step 4: seqretsplit: ../Tools/16_seqretsplit.cwl Step 5: needle (Global alignment): ../Tools/17_needle.cwl Step 6: water (Local alignment): ../Tools/17_water.cwl\" |
https://github.com/yonesora56/plant2human.git
Path: Workflow/11_retrieve_sequence_wf.cwl Branch/Commit ID: 6911e7a12e4be81f33e2962d0d5a1148898ec541 |
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env-wf3.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/env-wf3.cwl Branch/Commit ID: f02557902989c749c9c2187c7045e340e2d76bfc |
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fillout_workflow.cwl
Workflow to run GetBaseCountsMultiSample fillout on a number of bam files with a single maf file |
https://github.com/mskcc/pluto-cwl.git
Path: cwl/fillout_workflow.cwl Branch/Commit ID: 3bc4fab5503e58521ed0eb9c0d035ac18460dc13 |
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workflow_input_format_expr.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/workflow_input_format_expr.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
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workflow_input_sf_expr_array.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/workflow_input_sf_expr_array.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
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TAP
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https://github.com/MG-RAST/amplicon.git
Path: CWL/Workflows/tap.prok.short.workflow.cwl Branch/Commit ID: 107cdd243d21449459a2126ddc7a365da64a74c0 |
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Run pindel on provided region
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pindel_region.cwl Branch/Commit ID: 0c4f4e59c265eb22aed3d2d37b173cb5430773d2 |
