Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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phase VCF
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/subworkflows/phase_vcf.cwl Branch/Commit ID: low-vaf |
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EMG QC workflow, (paired end version). Benchmarking with MG-RAST expt.
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-qc-paired.cwl Branch/Commit ID: c1f8b22 |
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harmonization_bwa_mem_no_trim.cwl
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https://github.com/uc-cdis/genomel_pipelines.git
Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem_no_trim.cwl Branch/Commit ID: master |
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rhapsody_pipeline_2.0.cwl#VDJ_Assemble_and_Annotate_Contigs_TCR.cwl
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https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Assemble_and_Annotate_Contigs_TCR.cwl |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: master |
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rhapsody_pipeline_2.0.cwl#VDJ_Analyze_Reads_TCR.cwl
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https://github.com/Chi-CRL/cwl_check_workflow.git
Path: rhapsody_pipeline_2.0.cwl Branch/Commit ID: main Packed ID: VDJ_Analyze_Reads_TCR.cwl |
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step2: trimming fastq files (paired-end)
multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement |
https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git
Path: workflow/01_trimming_fastq_subworkflow_pe.cwl Branch/Commit ID: main |
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rRNA_selection.cwl
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: tools/rRNA_selection.cwl Branch/Commit ID: 56dafa4 |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: ca6ca613 |
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gatk-best-practice-generic-germline-short-variant-per-sample-cal_decomposed.cwl
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https://github.com/sevenbridges-openworkflows/Broad-Best-Practice-Germline-snps-and-indels-variant-calling-CWL1.0-workflow-GATK-4.1.0.0.git
Path: gatk-best-practice-generic-germline-short-variant-per-sample-cal_decomposed.cwl Branch/Commit ID: master |
