Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph somatic_subpipeline.cwl

https://github.com/PMCC-BioinformaticsCore/janis-pipelines.git

Path: janis_pipelines/wgs_somatic/cwl/tools/somatic_subpipeline.cwl

Branch/Commit ID: a6ca6be021d3d390a74ed6b151432d40f7427ae6
workflow graph bact_get_kmer_reference

https://github.com/ncbi/pgap.git

Path: task_types/tt_bact_get_kmer_reference.cwl

Branch/Commit ID: 8aa85573e659ef67163537d6811afdddcfad53dc
workflow graph scatter-wf4.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf4.cwl

Branch/Commit ID: 31aa094dce60cbb176229d6b918bfd5ae09c0390

Packed ID: main
workflow graph scatter-wf3_v1_2.cwl#main

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/scatter-wf3_v1_2.cwl

Branch/Commit ID: 139c64b55f7693d22e6646b8afe585f90da11dcb

Packed ID: main
workflow graph megahit_pipeline.cwl

https://github.com/EBI-Metagenomics/CWL-assembly.git

Path: cwl/megahit_pipeline.cwl

Branch/Commit ID: 7d4e5f321eef009419f8eb49661e21d432e82537
workflow graph calculate_contamination_workflow.cwl

GATK4.1.2 Calculate tumor-normal contamination workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/calculate_contamination_workflow.cwl

Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca
workflow graph taxonomy_check_16S

https://github.com/ncbi/pgap.git

Path: task_types/tt_taxonomy_check_16S.cwl

Branch/Commit ID: a33936cca222084cf68e00076255359688b6708a
workflow graph RSeQC workflow or single-end samples

This workflow runs the RSeQC quality control workflow

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/RSeQC/rseqc-bam-qc-SE.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61
workflow graph helloworld-htcondorcern.cwl

https://github.com/reanahub/reana-demo-helloworld.git

Path: workflow/cwl/helloworld-htcondorcern.cwl

Branch/Commit ID: 0d0e82eb39500eee470b4985de913f8138e41045
workflow graph scatter-valuefrom-wf5.cwl

https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/scatter-valuefrom-wf5.cwl

Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83