Explore Workflows

https://github.com/ncbi/pgap.git

Path: task_types/tt_align_merge_sas.cwl

Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408

This workflow is composed of 2 main steps that should generate 2 types of jobs: * MCSimulation (CommandLineTool): Gauss execution * MCReconstruction (Workflow): Boole, Moore, Brunel and DaVinci executions based on Gauss outputs

https://github.com/aldbr/dirac-cwl-proto.git

Path: test/workflows/lhcb/description.cwl

Branch/Commit ID: 0a7ab0154feadd641e17fdcabf3f0b83105fd4df

Assemble a set of reads using SKESA

https://github.com/ncbi/pgap.git

Path: assemble.cwl

Branch/Commit ID: 55b6ee46b0c9fb1c9949cd0888b388c6f11b73b1

Perform taxonomic identification tasks on an input genome

https://github.com/ncbi/pgap.git

Path: taxcheck.cwl

Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/search.cwl

Branch/Commit ID: a0f7d43bbc706af2a844be93fc19b2e4e4da626c

Packed ID: main

This workflow execute peak caller and QC for ChIP-seq using MACS2

https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/peak-calling-MACS2.cwl

Branch/Commit ID: f37e1346f1d48fe9f2b9282e37997a2e3ffed7e2

Reverse the lines in a document, then sort those lines.

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort_datetime.cwl

Branch/Commit ID: 18b8fdf7d425d8e7d8986e08904ef09492798cf6

PGAP pipeline for external usage, powered via containers

https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: 192b813eed8c0d368e69057cb39415175dd15128

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/alignment_umi_molecular.cwl

Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37

https://github.com/ddbj/sapporo-service.git

Path: tests/resources/cwltool/trimming_and_qc.cwl

Branch/Commit ID: 36da9db265120252f920ff7641e250d1d794715c