Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
![]() Path: workflows/bismark-index.cwl Branch/Commit ID: a68821bf3a9ceadc3b2ffbb535d601d9a645b377 |
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io-file-default-wf.cwl
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![]() Path: tests/io-file-default-wf.cwl Branch/Commit ID: ea9f8634e41824ac3f81c3dde698d5f0eef54f1b |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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![]() Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: 72c4c3115956340f35e72cda1fd46ec276f1ca03 |
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Unaligned BAM to BQSR and VCF
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![]() Path: definitions/subworkflows/bam_to_bqsr_no_dup_marking.cwl Branch/Commit ID: 51724b44c96e5fd849ae55b752865b80bc47d66c |
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Build Bismark indices
Copy fasta_file file to the folder and run run bismark_genome_preparation script to prepare indices for Bismark Methylation Analysis. Bowtie2 aligner is used by default. The name of the output indices folder is equal to the genome input. |
![]() Path: workflows/bismark-index.cwl Branch/Commit ID: ce058d892d330125cd03d0a0d5fb3b321cda0be3 |
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format_rrnas_from_seq_entry
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![]() Path: task_types/tt_format_rrnas_from_seq_entry.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64 |
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cluster_blastp_wnode and gpx_qdump combined
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![]() Path: task_types/tt_cluster_and_qdump.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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cache_asnb_entries
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![]() Path: task_types/tt_cache_asnb_entries.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30 |
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count-lines11-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: e9c83739a93fa0b18f8dea2f98b632a9e32725c9 |
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count-lines7-wf_v1_0.cwl
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![]() Path: testdata/count-lines7-wf_v1_0.cwl Branch/Commit ID: 0ab1d42d10f7311bb4032956c4a6f3d2730d9507 |