Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 54c5074587af001a44eccb4762a4cb25fa24cb3e |
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umi molecular alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: d3e4bf55753cd92f97537c7d701187ea92d1e5f0 |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: 038cb3617a1966a1057386adcde97ce55d9e1139 |
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pipeline_cavatica.cwl
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https://github.com/lux563624348/WDL-HuBMAP-salmon-rnaseq.git
Path: pipeline_cavatica.cwl Branch/Commit ID: 05d319bbc3cfd27e0621600c5681f2034d364262 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 0a9a4ce83b49ed4e7eee5bcc09d83725136a36b0 |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: cc7fb3e5c534036638921878527a610fd5e1c2ab |
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env-wf1.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl Branch/Commit ID: e4a52682f3bdefafe5c27e32983fed31116ac489 |
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step3: create STAR index
create STAR index for mapping CAGE-Seq data (step 1: decompress reference genome fasta file, step 2: create STAR index) |
https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git
Path: workflow/02_star_index_subworkflow.cwl Branch/Commit ID: 9728a86f7b73f7657a1f261e77a14ca59bdd561b |
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count-lines14-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/count-lines14-wf.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 |
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env-wf3.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf3.cwl Branch/Commit ID: 8010fd2bf1e7090ba6df6ca8c84bbb96e2272d32 |
