Explore Workflows
View already parsed workflows here or click here to add your own
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Prepare user input
Prepare user input for NCBI-PGAP pipeline |
https://github.com/ncbi/pgap.git
Path: prepare_user_input2.cwl Branch/Commit ID: d1dbdb71edf26840e0dceea60396bbfc65f56508 |
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Create tagAlign file
This workflow creates tagAlign file |
https://github.com/ncbi/cwl-ngs-workflows-cbb.git
Path: workflows/File-formats/create-tagAlign.cwl Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61 |
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811-12.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/811-12.cwl Branch/Commit ID: f453cdce5956fe6581f5ccdcb8aacb8c4f29f6d4 |
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sec-wf-out.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/sec-wf-out.cwl Branch/Commit ID: d64178072bc4fc9700ab80cdf90146890b96587e |
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Align reference proteins plane complete workflow
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https://github.com/ncbi/pgap.git
Path: protein_alignment/wf_protein_alignment.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
