Explore Workflows
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Showing results for "rnaseq" (Show all)
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xenbase-rnaseq-se.cwl
XenBase workflow for analysing RNA-Seq single-end data |
https://github.com/datirium/workflows.git
Path: workflows/xenbase-rnaseq-se.cwl Branch/Commit ID: db6abb2735f87614b870fca9990d36ea786cbbce |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 2d00e7f29c72d33b70dcd46b58db1fc31a7f2d86 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 9bf0aa495735f8081bb5870cb32fc898b9e6eb22 |
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rnaseq-header.cwl
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https://github.com/datirium/workflows.git
Path: metadata/rnaseq-header.cwl Branch/Commit ID: 02ffbbd7eb8e06bfb759edea440f78bdc8bb2631 |
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xenbase-rnaseq-pe.cwl
XenBase workflow for analysing RNA-Seq paired-end data |
https://github.com/datirium/workflows.git
Path: workflows/xenbase-rnaseq-pe.cwl Branch/Commit ID: 62323c137c0ce9b3f843df0dfbda28dafa7c90cf |
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xenbase-rnaseq-se.cwl
XenBase workflow for analysing RNA-Seq single-end data |
https://github.com/datirium/workflows.git
Path: workflows/xenbase-rnaseq-se.cwl Branch/Commit ID: 62323c137c0ce9b3f843df0dfbda28dafa7c90cf |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: 0798b3933ae3e6486596294984c7ffee50b94ef5 |
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Spliced RNAseq workflow
Workflow for Spliced RNAseq data Steps: - workflow_illumina_quality: - FastQC (Read Quality Control) - fastp (Read Trimming) - STAR (Read mapping) - featurecounts (transcript read counts) - kallisto (transcript [pseudo]counts) |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_RNAseq_Spliced.cwl Branch/Commit ID: b9097b82e6ab6f2c9496013ce4dd6877092956a0 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: f77a920bcc73f6cfdb091eed75a149d02cd8a263 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: ae75b938e6e8ae777a55686bbacad824b3c6788c |
