Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph psortedDefaultParams.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/psortedDefaultParams.cwl

Branch/Commit ID: master
workflow graph qc_uncollapsed_bam

https://github.com/msk-access/qc_generation.git

Path: access_qc__packed.cwl

Branch/Commit ID: develop

Packed ID: qc_uncollapsed_bam.cwl
workflow graph kfdrc_bwamem_subwf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: dev/ultra-opt/kfdrc_bwamem_subwf.cwl

Branch/Commit ID: master
workflow graph pileups_workflow.cwl

https://github.com/ReddyLab/bird-workflow.git

Path: 01_mpileups/pileups_workflow.cwl

Branch/Commit ID: main
workflow graph standard_pipeline.cwl

This is a workflow to go from UMI-tagged fastqs to standard bams. It does not include collapsing, or QC It does include modules 1 and 2

https://github.com/mskcc/ACCESS-Pipeline.git

Path: workflows/standard_pipeline.cwl

Branch/Commit ID: master
workflow graph rest_parallel.cwl

https://github.com/yuandou168/DecentralizedFL-CWL.git

Path: CWL_Workflow/rest_parallel.cwl

Branch/Commit ID: main
workflow graph pair-workflow-sv.cwl

https://github.com/mskcc/argos-cwl.git

Path: workflows/pair-workflow-sv.cwl

Branch/Commit ID: master
workflow graph createindex_localref.cwl

https://github.com/yyoshiaki/VIRTUS2.git

Path: workflow/createindex_localref.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/Duke-GCB/bespin-cwl.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: master
workflow graph Genomes.cwl

This workflow describes the comparative genomics and genome assembly summary statistics

https://github.com/hamid58b/cancer-genomics-workflow.git

Path: boa/Genomes.cwl

Branch/Commit ID: master