Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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kmer_ref_compare_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19 |
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pair-workflow.cwl
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https://github.com/mskcc/argos-cwl.git
Path: workflows/pair-workflow.cwl Branch/Commit ID: eb1c641d3134e7e13bc1a15fe7d8de7937527aca |
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ani_top_n
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https://github.com/ncbi/pgap.git
Path: task_types/tt_ani_top_n.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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io-file-default-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/io-file-default-wf.cwl Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83 |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: e4d42b85d24cd5088e14cc31d67c2dee0c6fc40a |
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PGAP Pipeline, simple user input, PGAPX-134
PGAP pipeline for external usage, powered via containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi/pgap.git
Path: pgap.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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exome alignment with qc, no bqsr, no verify_bam_id
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome_alignment_mouse.cwl Branch/Commit ID: 4ae14dd3a447c90022e3dfeb53fc05b8436e2775 |
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concat.cwl
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https://github.com/mskcc/pluto-cwl.git
Path: cwl/concat.cwl Branch/Commit ID: dbff0c5ae06a8b21ec70bc8279f32bce151cbfc2 |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: e7e888df9e7d44f036c4c7985e474016ee9e6525 |
