Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass1.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Execute CRISPR
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https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Run genomic CMsearch (Rfam rRNA)
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https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: aa64bf6a90e0780ab564de865dbb027df98c0a01 |
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Exome QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_exome.cwl Branch/Commit ID: f401b02285f30de1c12ac2859134099fe04be33f |
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Detect Variants workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/detect_variants.cwl Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827 |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: db0a91eb094d0a7c58042d4264986ea042dd4827 |
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WGS QC workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 9ad798f18104eb4a9c6c118f42691b9f5d9efd19 |
