Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
blastp_wnode_naming
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa |
|
|
|
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
|
|
|
timelimit4-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit4-wf.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
|
|
|
blastp_wnode_naming
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 72c3091012f5c2dce38ad9213cda617d2c7a61ac |
|
|
|
timelimit3-wf.cwl
|
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit3-wf.cwl Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf |
|
|
|
strelka workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 51724b44c96e5fd849ae55b752865b80bc47d66c |
|
|
|
analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: 3e967f035c10a176b9457331df0b3374a8562b26 |
|
|
|
somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
|
|
|
kmer_top_n_extract
|
https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: 0d9e6bb52eac0c209af3977aa779e39aaa432458 |
|
|
|
step_valuefrom5_wf_v1_2.cwl
|
https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_v1_2.cwl Branch/Commit ID: e78db9870cb744fe36674f43b3223c688e9989e1 |
