Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph trim_and_map.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/trim_and_map.cwl

Branch/Commit ID: master
workflow graph kfdrc_cram_reheader_wf.cwl

https://github.com/cr-ste-justine/chujs-alignment-workflow.git

Path: workflows/kfdrc_cram_reheader_wf.cwl

Branch/Commit ID: dev
workflow graph alignment_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_bwa_mem.cwl

Branch/Commit ID: master
workflow graph exomeseq-gatk4-01-preprocessing.cwl

https://github.com/bespin-workflows/exomeseq-gatk4.git

Path: subworkflows/exomeseq-gatk4-01-preprocessing.cwl

Branch/Commit ID: v2.0.3
workflow graph Running cellranger count and lineage inference

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/single_cell_rnaseq.cwl

Branch/Commit ID: master
workflow graph cnv_exomedepth

CNV ExomeDepth calling

https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git

Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl

Branch/Commit ID: 1.0.5
workflow graph bgzip and index VCF

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/bgzip_and_index.cwl

Branch/Commit ID: low-vaf
workflow graph fp_filter workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/fp_filter.cwl

Branch/Commit ID: low-vaf
workflow graph wgs alignment with qc

https://github.com/genome/cancer-genomics-workflow.git

Path: wgs_alignment.cwl

Branch/Commit ID: toil_compatibility
workflow graph Variant calling workflow for given interval

https://github.com/arvados/arvados-tutorial.git

Path: WGS-processing/cwl/helper/gatk-wf-with-interval.cwl

Branch/Commit ID: main