Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Subworkflow to allow calling cnvkit with cram instead of bam files
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cram_to_cnvkit.cwl Branch/Commit ID: f0cdc773e31e4aa116838e8aba4954c31bd3d68b |
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umi molecular alignment workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/molecular_qc.cwl Branch/Commit ID: ffab5424bb8b5905aecf6f8e2e6387da7f3df562 |
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indexing_bed
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https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/subworkflows/indexing_bed.cwl Branch/Commit ID: 992f84a959e1776acf3be77d2ca15fe11fa8673d |
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bam to trimmed fastqs and biscuit alignments
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/bam_to_trimmed_fastq_and_biscuit_alignments.cwl Branch/Commit ID: 44ada20f3eeb59005d5bd999d2435102e9bae991 |
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kmer_ref_compare_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_ref_compare_wnode.cwl Branch/Commit ID: 4533a5e930305c674057bc4cf5dda4f39d39b5df |
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genomics-workspace-transcript.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: flow_genomicsWorkspace/genomics-workspace-transcript.cwl Branch/Commit ID: 6f0888f9e4b15172109dcb1db2ee63f154a79100 |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/pvacseq.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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exome alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/exome.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 7f9cfcbda5998b164bd1d8f1f6006aefda0f47f3 |
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RNA-Seq alignment and transcript/gene abundance workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/rnaseq.cwl Branch/Commit ID: bc3e2a0666812d541418a82d0dfc4f0bba595be3 |
