Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d |
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count-lines11-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: cd779a90a4336563dcf13795111f502372c6af83 |
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WGS and MT analysis for fastq files
rna / protein - qc, preprocess, filter, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/wgs-fastq.workflow.cwl Branch/Commit ID: 3e967f035c10a176b9457331df0b3374a8562b26 |
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List ZIP content for zenodo community
For a given Zenodo community, list file content of its downloadable *.zip files |
https://github.com/stain/ro-index-paper.git
Path: code/data-gathering/workflows/zenodo-zip-content.cwl Branch/Commit ID: b43b2bf099406a606f1a873baa3452ec8888c7dd |
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Apply filters to VCF file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/filter_vcf.cwl Branch/Commit ID: d297528e53b6c1ecb69b1ab27b8e03323b4463ad |
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trnascan_wnode and gpx_qdump combined
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_scan_and_dump.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d |
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assm_assm_blastn_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_assm_assm_blastn_wnode.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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bacterial_orthology_cond
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https://github.com/ncbi/pgap.git
Path: bacterial_orthology/wf_bacterial_orthology_conditional.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: 3ee63d8757c341ca98b3b46ec4782862ad19b710 |
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extract_file_with_index.cwl
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https://github.com/NCI-GDC/aliquot-maf-cwl.git
Path: vcf-to-aliquot-maf/subworkflows/extract_file_with_index.cwl Branch/Commit ID: af9e756697f29b082790b65f129a6434fd5c4980 |
