Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph LBA_target.cwl

https://git.astron.nl/RD/LINC.git

Path: workflows/LBA_target.cwl

Branch/Commit ID: aa447a214b0be934805d1c751e4ce91f79b8922b
workflow graph kmer_cache_retrieve

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_retrieve.cwl

Branch/Commit ID: be9d12a3f8e1924183a1dc6a0bda6ada4195ca71
workflow graph Run tRNAScan

https://github.com/ncbi/pgap.git

Path: bacterial_trna/wf_trnascan.cwl

Branch/Commit ID: a2ac3ce9fc09f9ed0c0db5644cbd9d1bca984b2a
workflow graph CWL Example - Text Corpus Search Pipeline

End-to-end example workflow used to teach CWL concepts. It verifies and extracts a tar.gz text corpus, searches every extracted file for a pattern (as a scattered sub-workflow), lists a reference directory, writes and conditionally compresses a summary report, and (only if explicitly requested) would send a webhook notification. See diagrams/cwl-conceptual-overview.md and presentation/CWL-Example-Walkthrough.pptx for a guided explanation.

https://github.com/matteobasileeng/my-repo-cwl-example.git

Path: example/main-workflow.cwl

Branch/Commit ID: main
workflow graph scatter-valuefrom-wf5.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-valuefrom-wf5.cwl

Branch/Commit ID: 4c2667ef937c341af26e4f72b01056a06dce84fb
workflow graph HelloWorld-pipeline-000.cwl#hello_pipeline

A single step pipeline that uses the helloworld tool

 https://github.com/ILIAD-ocean-twin/application_package.git

Path: HelloWorld/files/HelloWorld-pipeline-000.cwl

Branch/Commit ID: 9a0db98839bbc655e12d49f56c61deecd77ff14c

Packed ID: hello_pipeline
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: be9d12a3f8e1924183a1dc6a0bda6ada4195ca71
workflow graph phase VCF

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/phase_vcf.cwl

Branch/Commit ID: 3c7a6e39d956ca065751f23ee0316ac3f3306d9a
workflow graph heatmap.cwl

Generates ATDP heatmap centered on TSS from an array of input BAM files and genelist TSV file. Returns array of heatmap JSON files with the names that have the same basenames as input BAM files, but with .json extension

https://github.com/Barski-lab/workflows.git

Path: workflows/heatmap.cwl

Branch/Commit ID: 14d0618786c1499e8626f234341e99782a1e55c2