Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 13b411d94a568e52797ba936732dc65f1a91bd41
workflow graph Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/pvacseq.cwl

Branch/Commit ID: c61af827113ebc41596aa839c65d21b4d2b0c8b6
workflow graph scRNA-seq pipeline using Salmon and Alevin

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: pipeline.cwl

Branch/Commit ID: 81e4484986251c48e3edbf5e1f141ab68677b8bd
workflow graph Subworkflow to allow calling cnvkit with cram instead of bam files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/cram_to_cnvkit.cwl

Branch/Commit ID: f90b39e1b05e9bb37079b09f337f7e7ba5027f99
workflow graph 03-map-se.cwl

ATAC-seq 03 mapping - reads: SE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-se.cwl

Branch/Commit ID: 81555a89cc2d16bd3ab131a6685a44b44f08f927
workflow graph dynresreq-workflow-stepdefault.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/dynresreq-workflow-stepdefault.cwl

Branch/Commit ID: 31bda22357987171f02ae6513fcc26e011e6afed
workflow graph conflict.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/conflict.cwl

Branch/Commit ID: 135a0c67afd67383c44e89fba136ccd9ce6afb1f

Packed ID: main
workflow graph exome alignment and somatic variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/somatic_exome_nonhuman.cwl

Branch/Commit ID: b465f0da2806ddb6df481409541d13288ccb40ec
workflow graph scatter-wf3.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl

Branch/Commit ID: e835bc0487fe42fb330b6222c9be65d18dd81ec9

Packed ID: main
workflow graph CODEX analysis pipeline using Cytokit

https://github.com/hubmapconsortium/codex-pipeline.git

Path: steps/illumination_first_stitching.cwl

Branch/Commit ID: cf68e50380d86410b2dc5edda79d2ef0f27314c9