Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Workflow that executes the Sounder SIPS end-to-end L1b processing

Requires valid AWS credentials as input arguments

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1b_workflow.cwl

Branch/Commit ID: a4fd2d3f33c94071241dcfc7a868aa6facd59dd6
workflow graph bed_to_coverage_track.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/bed_to_coverage_track.cwl

Branch/Commit ID: f6ad72e6aadbdb831921f3af81cd104ee2f1cd3a
workflow graph Workflow that executes the Sounder SIPS end-to-end L1a processing

Cognito credentials to access the U-DS services are retrieved from the AWS Parameter Store with the supplied keys.

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1a_workflow.cwl

Branch/Commit ID: a4fd2d3f33c94071241dcfc7a868aa6facd59dd6
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass4.cwl

Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
workflow graph extract_gencoll_ids

https://github.com/ncbi/pgap.git

Path: task_types/tt_extract_gencoll_ids.cwl

Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017
workflow graph STAR-Alignment-PE-circRNA

This workflow aligns the fastq files using STAR for paired-end samples to be used in circRNA pipeline

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment-circRNA-default.cwl

Branch/Commit ID: b5a440939ac6022ee81aeeb0dd7daf3983228a61
workflow graph tt_fscr_calls_pass1

https://github.com/ncbi/pgap.git

Path: task_types/tt_fscr_calls_pass1.cwl

Branch/Commit ID: d40ef1462a4c210be3184609dbb3467ff61fc017
workflow graph 03-map-pe.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe.cwl

Branch/Commit ID: 6e68bda2cb45e8dc8e4d067c4220d65acfa53065
workflow graph pipeline-pe-blacklist-removal.cwl

ATAC-seq pipeline - reads: PE - with blacklist removal

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/pipeline-pe-blacklist-removal.cwl

Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685