Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
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Bacterial Annotation, pass 3, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass3.cwl Branch/Commit ID: b548dc1ec6cb90d14d57a813fb69430adaa1c425 |
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kmer_top_n_extract
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n_extract.cwl Branch/Commit ID: e351f650524b532f85820b8e53855010b35046c2 |
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concatenate-flag.cwl
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https://git.astron.nl/RD/VLBI-cwl.git
Path: workflows/concatenate-flag.cwl Branch/Commit ID: b4c18092637726b245f7040d87fbfdf7baee3e8e |
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process_dl0_dl1_multiple.cwl
Process multiple dl0 files using process_dl0_dl1 and then merge the individual result files into one common output file using the merge tool. This is useful for processing simulation files in DIRAC as processing a single file per DIRAC job would result in very many, very short jobs that are not ideal for the workflow management system. |
https://gitlab.cta-observatory.org/cta-computing/dpps/datapipe/datapipe.git
Path: workflows/process_dl0_dl1_multiple.cwl Branch/Commit ID: 3b83e017d1205b2187b2c755ebb3d7e9432423ba |
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gp_makeblastdb
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https://github.com/ncbi/pgap.git
Path: progs/gp_makeblastdb.cwl Branch/Commit ID: 68311dd5328bf6b782a370a0253b41062a3359a3 |
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kf_alignment_optimized_wf
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https://github.com/inab/vre_cwl_executor.git
Path: tests/basic/data/workflows/basic_example_3.cwl Branch/Commit ID: f4bbddb93cb38e50b8c2eb89d43b926138fa3455 |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
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align_sort_sa
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_sort_sa.cwl Branch/Commit ID: 91181df8d9ef8eed9d8f40db707b9a4376fecaf5 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580 |
