Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph STAR-Alignment-PE

This workflow aligns the fastq files using STAR for paired-end samples

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Alignments/star-alignment.cwl

Branch/Commit ID: master
workflow graph bulk_analysis.cwl

https://github.com/hubmapconsortium/sc-atac-seq-pipeline.git

Path: steps/bulk_analysis.cwl

Branch/Commit ID: 4b2af54
workflow graph wf-alignment.cwl

https://github.com/bcbio/bcbio_validation_workflows.git

Path: NA12878-chr20/NA12878-platinum-chr20-workflow-arvados/wf-alignment.cwl

Branch/Commit ID: master
workflow graph exome alignment and somatic variant detection for cle purpose

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome_cle.cwl

Branch/Commit ID: low-vaf
workflow graph vector_cleanup

This workflow detect and remove vectors from a DNA fasta file

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/Contamination/vector-cleanup.cwl

Branch/Commit ID: master
workflow graph no-outputs-wf.cwl

Workflow without outputs.

 https://github.com/common-workflow-language/cwl-v1.1.git

Path: tests/no-outputs-wf.cwl

Branch/Commit ID: master
workflow graph bams2gvcf.wBQSR.multisamples.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.wBQSR.multisamples.cwl

Branch/Commit ID: master
workflow graph ST610106.cwl

https://github.com/Marco-Salvi/dtc61.git

Path: ST610106.cwl

Branch/Commit ID: main
workflow graph textures.cwl

Create emblem textures

 https://gitlab.com/unduthegun/stellaris-emblem-lab.git

Path: textures/textures.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: ca6ca613