Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph step2: trimming fastq files (single-end)

multiple fastq files trimming process using fastp version 0.23.4 and scatter feature requirement

 https://github.com/RyoNozu/CWL4IncorporateTSSintoGXF.git

Path: workflow/01_trimming_fastq_subworkflow_se.cwl

Branch/Commit ID: main
workflow graph image_workflow.cwl

https://github.com/peijin94/LOFAR-Sun-tools.git

Path: utils/IM/LINC/lincSun/workflow/image_workflow.cwl

Branch/Commit ID: master
workflow graph qc-assembled.workflow.cwl

https://github.com/MG-RAST/pipeline.git

Path: CWL/Workflows/qc-assembled.workflow.cwl

Branch/Commit ID: master
workflow graph Per-region pindel

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/pindel_cat.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Apply filters to VCF file

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/subworkflows/filter_vcf_mouse.cwl

Branch/Commit ID: downsample_and_recall
workflow graph Exome QC workflow

https://github.com/apaul7/cancer-genomics-workflow.git

Path: definitions/subworkflows/qc_exome_no_verify_bam.cwl

Branch/Commit ID: low-vaf
workflow graph check_bams_wf.cwl

https://github.com/heliumdatacommons/TOPMed_RNAseq_CWL.git

Path: workflow/checker-workflows/check_bams_wf.cwl

Branch/Commit ID: master
workflow graph Identify somatic SVs

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/sv_merge_and_filter.cwl

Branch/Commit ID: master
workflow graph cram-get-fasta.cwl

https://github.com/wtsi-hgi/arvados-pipelines.git

Path: cwl/workflows/cram-get-fasta.cwl

Branch/Commit ID: master
workflow graph heatmap-prepare.cwl

Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order.

https://github.com/mr-c/datirium-workflows.git

Path: tools/heatmap-prepare.cwl

Branch/Commit ID: license_test