Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph downsample unaligned BAM and align

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/downsampled_alignment.cwl

Branch/Commit ID: 3f3b186da9bf82a5e2ae74ba27aef35a46174ebe
workflow graph search.cwl#main

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/search.cwl

Branch/Commit ID: 4bf61c8a3d519eefd8b9271af73974bec62535ba

Packed ID: main
workflow graph Run genomic CMsearch (Rfam rRNA)

https://github.com/ncbi/pgap.git

Path: bacterial_ncrna/wf_gcmsearch.cwl

Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc
workflow graph kfdrc_star_diploid_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/kfdrc_star_diploid_wf.cwl

Branch/Commit ID: 5d9dd57011df312e3ecdea4e64d71e24ed38ac12
workflow graph workflow_inputs.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/workflow_inputs.cwl

Branch/Commit ID: 3df778190c16ee0c284a7017ca3173276cb91045
workflow graph Workflow that executes the Sounder SIPS end-to-end L1b processing

Requires valid AWS credentials as input arguments

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1b_workflow.cwl

Branch/Commit ID: a4fd2d3f33c94071241dcfc7a868aa6facd59dd6
workflow graph bed_to_coverage_track.cwl

https://github.com/CompEpigen/ATACseq_workflows.git

Path: CWL/workflow_modules/bed_to_coverage_track.cwl

Branch/Commit ID: f6ad72e6aadbdb831921f3af81cd104ee2f1cd3a
workflow graph Workflow that executes the Sounder SIPS end-to-end L1a processing

Cognito credentials to access the U-DS services are retrieved from the AWS Parameter Store with the supplied keys.

 https://github.com/unity-sds/unity-sps-workflows.git

Path: sounder_sips/ssips_L1a_workflow.cwl

Branch/Commit ID: a4fd2d3f33c94071241dcfc7a868aa6facd59dd6
workflow graph gp_makeblastdb

https://github.com/ncbi/pgap.git

Path: progs/gp_makeblastdb.cwl

Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81
workflow graph Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)

https://github.com/ncbi/pgap.git

Path: bacterial_annot/wf_bacterial_annot_pass4.cwl

Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc