Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
conflict-wf.cwl#collision
|
https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/conflict-wf.cwl Branch/Commit ID: 17695244222b0301b37cb749fe4a8d89622cd1ad Packed ID: collision |
|
|
|
filter_alignment_artifacts.cwl
GATK4.1.2 Alignment artifacts filtration workflow |
https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: subworkflows/filter_alignment_artifacts.cwl Branch/Commit ID: cc7d31c9b8e5a0d0be41203513007df2cb341f73 |
|
|
|
Motif Finding with HOMER with custom background regions
Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/) |
https://github.com/datirium/workflows.git
Path: workflows/homer-motif-analysis-bg.cwl Branch/Commit ID: 7eef0294395d83ff0765fce61726a59d71126422 |
|
|
|
bacterial_screening.cwl
|
https://github.com/ncbi/pgap.git
Path: vecscreen/bacterial_screening.cwl Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d |
|
|
|
group-isoforms-batch.cwl
Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored. |
https://github.com/datirium/workflows.git
Path: tools/group-isoforms-batch.cwl Branch/Commit ID: 8bf36bfad5624fbc8fc315e82783a44e9e5e4470 |
|
|
|
WGS QC workflow
|
https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/qc_wgs.cwl Branch/Commit ID: 51724b44c96e5fd849ae55b752865b80bc47d66c |
|
|
|
exome_metrics.cwl
|
https://github.com/nci-gdc/gdc-dnaseq-cwl.git
Path: workflows/bamfastq_align/exome_metrics.cwl Branch/Commit ID: 6b43e8b03256492f2b36ffcf548704daaafee6f6 |
|
|
|
wgs alignment and tumor-only variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/tumor_only_wgs.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
|
|
|
step-valuefrom2-wf_v1_1.cwl
|
https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step-valuefrom2-wf_v1_1.cwl Branch/Commit ID: 0ad6983898f0d9001fe0f416f97c4d8b940e384a |
|
|
|
wgs alignment and germline variant detection
|
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/germline_wgs.cwl Branch/Commit ID: 0c4855bf23622828413ecb09dd30754691c28014 |
