Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
|---|---|---|---|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_ab_initio_training.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Bacterial Annotation, structural annotation, functional annotation: ab initio GeneMark, by WP, by HMM (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_2nd_pass.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Run genomic CMsearch (Rfam rRNA)
|
https://github.com/ncbi/pgap.git
Path: bacterial_ncrna/wf_gcmsearch.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Bacterial Annotation, pass 4, blastp-based functional annotation (second pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass4.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Bacterial Annotation, pass 1, genemark training, by HMMs (first pass)
|
https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_orf_hmms.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Execute CRISPR
|
https://github.com/ncbi/pgap.git
Path: bacterial_mobile_elem/wf_bacterial_mobile_elem.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Non-Coding Bacterial Genes
|
https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
Run tRNAScan
|
https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
|
|
|
checkm
|
https://github.com/ncbi/pgap.git
Path: checkm/wf_checkm.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
