Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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vecscreen.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/vecscreen.cwl Branch/Commit ID: 5282690e0f634a5f83107ba878fe62cbbb347408 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: ce433f771ebf5677c9f40858e2ae91b1a7e75d30 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 72804b6506c9f54ec75627f82aafe6a28d7a49fa |
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Run tRNAScan
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https://github.com/ncbi/pgap.git
Path: bacterial_trna/wf_trnascan.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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timelimit4-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit4-wf.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
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blastp_wnode_naming
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https://github.com/ncbi/pgap.git
Path: task_types/tt_blastp_wnode_naming.cwl Branch/Commit ID: 72c3091012f5c2dce38ad9213cda617d2c7a61ac |
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timelimit3-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit3-wf.cwl Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf |
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strelka workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/strelka_and_post_processing.cwl Branch/Commit ID: 51724b44c96e5fd849ae55b752865b80bc47d66c |
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analysis for assembled sequences
rna / protein - qc, annotation, index, abundance |
https://github.com/MG-RAST/pipeline.git
Path: CWL/Workflows/assembled.workflow.cwl Branch/Commit ID: 3e967f035c10a176b9457331df0b3374a8562b26 |
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somatic_exome: exome alignment and somatic variant detection
somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml |
https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 00df82a529a58d362158110581e1daa28b4d7ecb |
