Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph Create target and anti-target files for CNA analysis

https://github.com/ChrisMaherLab/PACT.git

Path: subworkflows/cnvkit_prep_regions.cwl

Branch/Commit ID: master
workflow graph tRNA_selection.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: a8abd0e
workflow graph bams2gvcf.woBQSR_male_chrXY_wXTR.cwl

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_male_chrXY_wXTR.cwl

Branch/Commit ID: master
workflow graph RNA-Seq alignment and transcript/gene abundance workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/rnaseq.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: f6b5196
workflow graph dedup-3-pass-distr.cwl

run 3-pass dedup: algo LocusCollector + algo Dedup output_dup_read_name + algo Dedup dedup_by_read_name sequentially in distributed mode

 https://github.com/sentieon/sentieon-cwl.git

Path: stage/dedup-3-pass-distr.cwl

Branch/Commit ID: master
workflow graph pcawg_oxog_wf.cwl

This workflow will perform OxoG filtering on a set of VCFs. It will produce VCFs and their associated index files.

https://github.com/ICGC-TCGA-PanCancer/pcawg-oxog-filter.git

Path: pcawg_oxog_wf.cwl

Branch/Commit ID: 1.0.0
workflow graph scatter-wf2.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/scatter-wf2.cwl

Branch/Commit ID: main
workflow graph Single-cell Multiome ATAC and RNA-Seq Aggregate

Single-cell Multiome ATAC and RNA-Seq Aggregate Aggregates data from multiple Single-cell Multiome ATAC and RNA-Seq Alignment experiments

 https://github.com/Barski-lab/sc-seq-analysis.git

Path: workflows/sc-multiome-aggregate-wf.cwl

Branch/Commit ID: main
workflow graph MoveData-workflow.cwl

https://github.com/NAL-i5K/Organism_Onboarding.git

Path: MoveData-workflow.cwl

Branch/Commit ID: master