Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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taxcheck.cwl
Perform taxonomic identification tasks on an input genome |
https://github.com/ncbi/pgap.git
Path: taxcheck.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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basic_quote.cwl
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https://github.com/common-workflow-lab/wdl-cwl-translator.git
Path: wdl2cwl/tests/cwl_files/basic_quote.cwl Branch/Commit ID: 471bf44b717b69b108fc6d13bc71fac55827d1dd |
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scatterfail.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/scatterfail.cwl Branch/Commit ID: 256306a5da1eb0a8391d5f6734e7baae96922079 |
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HBA_target.cwl
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https://git.astron.nl/RD/LINC.git
Path: workflows/HBA_target.cwl Branch/Commit ID: 7b6185e2e6f9d36b1987274e82842c82ba6f8342 |
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Create Genomic Collection for Bacterial Pipeline
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https://github.com/ncbi/pgap.git
Path: genomic_source/wf_genomic_source.cwl Branch/Commit ID: e9cc6de8cd1e00345969c646e5e6f27d7d10420f |
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Non-Coding Bacterial Genes
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https://github.com/ncbi/pgap.git
Path: bacterial_noncoding/wf_bacterial_noncoding.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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worldpopulation.cwl
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https://github.com/reanahub/reana-demo-worldpopulation.git
Path: workflow/cwl/worldpopulation.cwl Branch/Commit ID: e93c3c14164be65f65703ced5d9d2544824ff480 |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/Barski-lab/workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a |
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vecscreen.cwl
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https://github.com/ncbi/pgap.git
Path: vecscreen/vecscreen.cwl Branch/Commit ID: 09774c78a965dd8f6c315597a53eef5998a3c1b6 |
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cache_test_workflow.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/cache_test_workflow.cwl Branch/Commit ID: 048eb55aefd8d71d161fbc89ec0e888b8bfa0aa1 |
