Explore Workflows
View already parsed workflows here or click here to add your own
Graph | Name | Retrieved From | View |
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count-lines11-wf.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/count-lines11-wf.cwl Branch/Commit ID: 047e69bb169e79fad6a7285ee798c4ecec3b218b |
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wf_get_peaks_pe.cwl
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https://github.com/YeoLab/eclip.git
Path: cwl/wf_get_peaks_pe.cwl Branch/Commit ID: c0fffc4979a92371dc0667a03e3d957bf7f77600 |
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bulk scRNA-seq pipeline using Salmon
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: bulk-pipeline.cwl Branch/Commit ID: 14d004a163e02a5f8f8590e568a2f4f153508931 |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
https://github.com/icgc-tcga-pancancer/pcawg-minibam.git
Path: pcawg_minibam_wf.cwl Branch/Commit ID: e9f3694e31e3c1570183a4f444a44015766f9f2f |
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star-index.cwl
Generates indices for STAR v2.5.3a (03/17/2017). |
https://github.com/datirium/workflows.git
Path: workflows/star-index.cwl Branch/Commit ID: cf107bc24a37883ef01b959fd89c19456aaecc02 |
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minibam_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/david4096/oxog-dockstore-tools.git
Path: minibam_sub_wf.cwl Branch/Commit ID: 6366ed398da10019b6d81a789291af6d909f28f4 |
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Subworkflow that runs cnvkit in single sample mode and returns a vcf file
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/cnvkit_single_sample.cwl Branch/Commit ID: ffd73951157c61c1581d346628d75b61cdd04141 |
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SoupX - an R package for the estimation and removal of cell free mRNA contamination
Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) ================================================================= |
https://github.com/datirium/workflows.git
Path: workflows/soupx.cwl Branch/Commit ID: 4ab9399a4777610a579ea2c259b9356f27641dcc |
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kmer_seq_entry_extract_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_seq_entry_extract_wnode.cwl Branch/Commit ID: 17bae57a1f00f5c6db8f3a82d86262f12b8153cf |
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basename-fields-test.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/basename-fields-test.cwl Branch/Commit ID: 047e69bb169e79fad6a7285ee798c4ecec3b218b |