Explore Workflows
View already parsed workflows here or click here to add your own
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Production
Top-level workflow |
![]() Path: dpps.cwl Branch/Commit ID: ec1a4bfae4734034594a4a96f152874562a8976f |
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autosubmit.cwl
An example workflow created using Autosubmit's basic a000 workflow as reference. The `platform.yml` is ignored as it contains only information about platforms (e.g. it could be given to a tool like Troika as-is). `expdef.yml` and `autosubmit.yml` basically provide CWL inputs. `jobs.yml` contains the steps of the CWL workflow, with their dependencies. In CWL dependencies are specified via inputs and outputs. When task A outputs a value X, and task B has an input of type A/X, then the dependency A -> B is created in CWl. This is different than Autosubmit, and needs some care to guarantee the correct order in the workflow graph of start dates, members, chunks, etc. |
![]() Path: notes/autosubmit/autosubmit.cwl Branch/Commit ID: a0ac037a35cd4c2fc2ee83f40d381c3e7d96f56b |
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Seed Protein Alignments
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![]() Path: protein_alignment/wf_seed_seqids.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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Salmon quantification, FASTQ -> H5AD count matrix
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![]() Path: steps/salmon-quantification.cwl Branch/Commit ID: 4bb798ee52be48e28734c1e1b548d47e3202ffaa |
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blastp_wnode_struct
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![]() Path: task_types/tt_blastp_wnode_struct.cwl Branch/Commit ID: 008a090fb1938fbb393494ac8fcb219f0d9f5295 |
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Single-Cell Differential Abundance Analysis
Single-Cell Differential Abundance Analysis Compares the composition of cell types between two tested conditions |
![]() Path: workflows/sc-rna-da-cells.cwl Branch/Commit ID: 1f68f6aa0d71d8f90a7ae37a1c7db4580e199b68 |
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count-lines1-wf.cwl
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![]() Path: cwltool/schemas/v1.0/v1.0/count-lines1-wf.cwl Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd |
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Create Genomic Collection for Bacterial Pipeline, ASN.1 input
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![]() Path: genomic_source/wf_genomic_source_asn.cwl Branch/Commit ID: 68b828ac482956a03325623d817780986f34fb31 |
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env-wf1.cwl
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![]() Path: tests/env-wf1.cwl Branch/Commit ID: 1f3ef888d9ef2306c828065c460c1800604f0de4 |
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GATK4_SomaticVariantCaller_4_1_3_0.cwl
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![]() Path: janis_pipelines/wgs_somatic/cwl/tools/GATK4_SomaticVariantCaller_4_1_3_0.cwl Branch/Commit ID: a3d1f3b870eb834fed14ebcc928ea6a2270441a8 |