Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph cond-wf-005.1.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/cond-wf-005.1.cwl

Branch/Commit ID: c1875d54dedc41b1d2fa08634dcf1caa8f1bc631
workflow graph cond-wf-004.cwl

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/conditionals/cond-wf-004.cwl

Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9
workflow graph workflow_input_format_expr_v1_2.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/workflow_input_format_expr_v1_2.cwl

Branch/Commit ID: c1875d54dedc41b1d2fa08634dcf1caa8f1bc631
workflow graph personal_genome_input_wf.cwl

https://github.com/kids-first/kf-rnaseq-workflow.git

Path: workflow/personal_genome_input_wf.cwl

Branch/Commit ID: 3fd55a819cda2a1fc48957b5daa2bebdaee843fb
workflow graph Bisulfite alignment and QC

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 49508a2757ff2f49f1c200774a38af1c12b531bf
workflow graph conflict-wf.cwl#collision

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/conflict-wf.cwl

Branch/Commit ID: 17695244222b0301b37cb749fe4a8d89622cd1ad

Packed ID: collision
workflow graph filter_alignment_artifacts.cwl

GATK4.1.2 Alignment artifacts filtration workflow

https://github.com/nci-gdc/gatk4_mutect2_cwl.git

Path: subworkflows/filter_alignment_artifacts.cwl

Branch/Commit ID: cc7d31c9b8e5a0d0be41203513007df2cb341f73
workflow graph Motif Finding with HOMER with custom background regions

Motif Finding with HOMER with custom background regions --------------------------------------------------- HOMER contains a novel motif discovery algorithm that was designed for regulatory element analysis in genomics applications (DNA only, no protein). It is a differential motif discovery algorithm, which means that it takes two sets of sequences and tries to identify the regulatory elements that are specifically enriched in on set relative to the other. It uses ZOOPS scoring (zero or one occurrence per sequence) coupled with the hypergeometric enrichment calculations (or binomial) to determine motif enrichment. HOMER also tries its best to account for sequenced bias in the dataset. It was designed with ChIP-Seq and promoter analysis in mind, but can be applied to pretty much any nucleic acids motif finding problem. For more information please refer to: ------------------------------------- [Official documentation](http://homer.ucsd.edu/homer/motif/)

 https://github.com/datirium/workflows.git

Path: workflows/homer-motif-analysis-bg.cwl

Branch/Commit ID: 7eef0294395d83ff0765fce61726a59d71126422
workflow graph bacterial_screening.cwl

https://github.com/ncbi/pgap.git

Path: vecscreen/bacterial_screening.cwl

Branch/Commit ID: 8ea3637b0f11eac1ea5599c41d74e00d85fb778d
workflow graph group-isoforms-batch.cwl

Workflow runs group-isoforms.cwl tool using scatter for isoforms_file input. genes_filename and common_tss_filename inputs are ignored.

https://github.com/datirium/workflows.git

Path: tools/group-isoforms-batch.cwl

Branch/Commit ID: 8bf36bfad5624fbc8fc315e82783a44e9e5e4470