Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph transform.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/dnaseq/transform.cwl

Branch/Commit ID: 1.0
workflow graph Calculate FDA-requested metrics on all aligned and unaligned sequence files

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/generate_fda_metrics.cwl

Branch/Commit ID: master
workflow graph md5sum.cwl

https://github.com/briandoconnor/dockstore-workflow-md5sum-tester.git

Path: md5sum/md5sum.cwl

Branch/Commit ID: develop
workflow graph bwameth_align_merge_sort_dedup.cwl

https://github.com/ifishlin/Benchmarking_CWL.git

Path: workflows/bwameth/tools/bwameth_align_merge_sort_dedup.cwl

Branch/Commit ID: main
workflow graph BLASTP, parse, dump FASTA

https://github.com/ncbi/cwl-demos.git

Path: blast-pipelines/simple_three_step.cwl

Branch/Commit ID: master
workflow graph QIIME2 Step 1 paired end sequences

QIIME2 Import and Demux Step 1 paired end sequences

https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: main
workflow graph rRNA_selection.cwl

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/rRNA_selection.cwl

Branch/Commit ID: 5dc7c5c
workflow graph EMG assembly for paired end Illumina

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: workflows/emg-assembly.cwl

Branch/Commit ID: 8e196ab
workflow graph 03-map-pe-blacklist-removal.cwl

ATAC-seq 03 mapping - reads: PE

 https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/ATAC-seq_pipeline/03-map-pe-blacklist-removal.cwl

Branch/Commit ID: v1.0
workflow graph seqprep-subwf.cwl

https://github.com/EBI-Metagenomics/pipeline-v5.git

Path: workflows/subworkflows/seqprep-subwf.cwl

Branch/Commit ID: master