Explore Workflows

https://github.com/mskcc/Innovation-Pipeline.git

Path: workflows/subworkflows/call_variants.cwl

Branch/Commit ID: master

https://github.com/kinow/pipeline-v5.git

Path: workflows/subworkflows/functional-annotation/post-proccessing-go-pfam-stats-subwf.cwl

Branch/Commit ID: eosc-life-gos

https://github.com/common-workflow-language/cwl-v1.2.git

Path: tests/count-lines4-wf.cwl

Branch/Commit ID: main

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step1-import-demux-paired.cwl

Branch/Commit ID: qiime2-workflow-paired

Packed ID: qiime2-02-demux-emp-paired.cwl

https://renkulab.io/gitlab/team-renku/zurich-bikes-analysis.git

Path: .renku/workflow/5fb4c1087a8d46e7885c74e0e3d79d90.cwl

Branch/Commit ID: master

The workflow is used to run CHIP-Seq basic analysis with single-end input FASTQ file. In outputs it returns coordinate sorted BAM file alongside with index BAI file, quality statistics of the input FASTQ file, reads coverage in a form of bigWig file, peaks calling data in a form of narrowPeak or broadPeak files.

https://github.com/Barski-lab/ga4gh_challenge.git

Path: biowardrobe_chipseq_se.cwl

Branch/Commit ID: v0.0.5

https://github.com/common-workflow-language/common-workflow-language.git

Path: v1.0/v1.0/count-lines8-wf.cwl

Branch/Commit ID: master

https://github.com/ddbj/human-reseq.git

Path: Workflows/bams2gvcf.woBQSR_female_chrX_wXTR.multisapmles.cwl

Branch/Commit ID: master

Whole Exome Sequence analysis GATK4 Preprocessing

https://github.com/Duke-GCB/bespin-cwl.git

Path: workflows/exomeseq-gatk4.cwl

Branch/Commit ID: master

RNA-seq 02 trimming - reads: SE

https://github.com/alexbarrera/GGR-cwl.git

Path: v1.0/RNA-seq_pipeline/02-trim-se.cwl

Branch/Commit ID: master