Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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downsample unaligned BAM and align
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/downsampled_alignment.cwl Branch/Commit ID: 26806d99f8e2a241715fd081e712d4e3763db5b8 |
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scatter-wf3.cwl#main
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/scatter-wf3.cwl Branch/Commit ID: 7bfd77118cdc80dd7150115dd7a1a7ee6046f6fe Packed ID: main |
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umi molecular alignment fastq workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/alignment_umi_molecular.cwl Branch/Commit ID: 3a822294da63b4e19446a285e2fef075e23cf3d0 |
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js-expr-req-wf.cwl#wf
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: 4d4bbc301c81cbbae9b7f40fb3da3fa16d900fe3 Packed ID: wf |
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Nested workflow example
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https://github.com/common-workflow-language/cwltool.git
Path: tests/wf/nested.cwl Branch/Commit ID: 048eb55aefd8d71d161fbc89ec0e888b8bfa0aa1 |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/Barski-lab/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: cf678db8304ffaa20c1d6c854364db5ed41803c2 |
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apolloServer-createOrganism-workflow.cwl
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https://github.com/NAL-i5K/Organism_Onboarding.git
Path: apolloServer-createOrganism-workflow.cwl Branch/Commit ID: 8b8c6dd16e06b43fbb50f1c0821856a31f1bbbc5 |
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inpdir_update_wf.cwl
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/inpdir_update_wf.cwl Branch/Commit ID: 5e3fac092a720c5670ae3e787eabe1aaade71d83 |
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trim-chipseq-se.cwl
Runs ChIP-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-chipseq-se.cwl Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a |
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workflow-slurmcern.cwl
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https://github.com/reanahub/reana-demo-root6-roofit.git
Path: workflow/cwl/workflow-slurmcern.cwl Branch/Commit ID: 7bcc95b2c8a901d831fda01308f74d2228ed945e |
