Explore Workflows
View already parsed workflows here or click here to add your own
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multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline
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Path: pipeline.cwl Branch/Commit ID: c338cd3 |
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analysis-workflow.cwl
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Path: cwl/analysis-workflow.cwl Branch/Commit ID: master |
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fetch-proteins.cwl
Filter accessions and retrieve their sequences. |
Path: workflows/fetch-proteins.cwl Branch/Commit ID: master |
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pcr-bottleneck-coef.cwl
ChIP-seq - map - PCR Bottleneck Coefficients |
Path: v1.0/map/pcr-bottleneck-coef.cwl Branch/Commit ID: master |
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gatk4W-spark.cwl
Author: AMBARISH KUMAR er.ambarish@gmail.com & ambari73_sit@jnu.ac.in This is a proposed standard operating procedure for genomic variant detection using GATK4. It is hoped to be effective and useful for getting SARS-CoV-2 genome variants. It uses Illumina RNASEQ reads and genome sequence. |
Path: gatk4W-spark.cwl Branch/Commit ID: release |
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pcawg_minibam_wf.cwl
This workflow will run OxoG, variantbam, and annotate. Run this as `dockstore --script --debug workflow launch --descriptor cwl --local-entry --entry ./oxog_varbam_annotate_wf.cwl --json oxog_varbam_annotat_wf.input.json ` |
Path: pcawg_minibam_wf.cwl Branch/Commit ID: 1.0.0 |
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kmer_cache_store
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Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 68b828ac482956a03325623d817780986f34fb31 |
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id_to_json_workflow.cwl
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Path: cwl/id_to_json_workflow.cwl Branch/Commit ID: master |
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revsortlcase.cwl
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Path: cwl/revsortlcase/revsortlcase.cwl Branch/Commit ID: main |
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sc_atac_seq_initial_analysis.cwl
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Path: steps/sc_atac_seq_initial_analysis.cwl Branch/Commit ID: 06aeffe |
