Explore Workflows
View already parsed workflows here or click here to add your own
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qa_check_subwf.cwl
This subworkflow will perform a QA check on the OxoG outputs. It will perform the QA check on a single tumour and it associated VCFs |
Path: qa_check_subwf.cwl Branch/Commit ID: master |
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cow_test_workflow.cwl
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Path: cow_test_workflow.cwl Branch/Commit ID: master |
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HS Metrics workflow
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Path: definitions/subworkflows/hs_metrics.cwl Branch/Commit ID: downsample_and_recall |
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exomeseq-gatk4-03-organizedirectories.cwl
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Path: subworkflows/exomeseq-gatk4-03-organizedirectories.cwl Branch/Commit ID: gatk4-fixes |
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bulk_process.cwl
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Path: steps/bulk_process.cwl Branch/Commit ID: 302f1f3 |
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unzipBAMs.cwl
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Path: unzip/unzipBAMs.cwl Branch/Commit ID: master |
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zip_and_index_vcf.cwl
This is a very simple workflow of two steps. It will zip an input VCF file and then index it. The zipped file and the index file will be in the workflow output. |
Path: zip_and_index_vcf.cwl Branch/Commit ID: 1.0.0 |
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RNASelector as a CWL workflow
https://doi.org/10.1007/s12275-011-1213-z |
Path: workflows/rna-selector.cwl Branch/Commit ID: 71d9c83 |
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msi.cwl
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Path: workflows/subworkflows/msi.cwl Branch/Commit ID: master |
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kallisto.cwl
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Path: kallisto.cwl Branch/Commit ID: master |
