Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: 135976d |
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Detect Variants workflow
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https://github.com/apaul7/cancer-genomics-workflow.git
Path: definitions/pipelines/detect_variants_nonhuman.cwl Branch/Commit ID: low-vaf |
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annotator_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/ICGC-TCGA-PanCancer/OxoG-Dockstore-Tools.git
Path: annotator_sub_wf.cwl Branch/Commit ID: 1.0.0 |
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wf-alignment.cwl
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https://github.com/bcbio/test_bcbio_cwl.git
Path: somatic/somatic-workflow/wf-alignment.cwl Branch/Commit ID: master |
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qiime2 Deblur detect/correct sequence data
Option 2: Deblur from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
https://github.com/Duke-GCB/bespin-cwl.git
Path: packed/qiime2-step2-deblur.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-03-deblur.cwl |
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scRNA-seq pipeline using Salmon and Alevin
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https://github.com/hubmapconsortium/salmon-rnaseq.git
Path: pipeline.cwl Branch/Commit ID: 536d6ed |
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msa.cwl
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https://github.com/CERIT-SC/fireprot.git
Path: msa.cwl Branch/Commit ID: master |
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BD Rhapsody™ Targeted Analysis Pipeline
The BD Rhapsody™ assays are used to create sequencing libraries from single cell transcriptomes. After sequencing, the analysis pipeline takes the FASTQ files and a reference file for gene alignment. The pipeline generates molecular counts per cell, read counts per cell, metrics, and an alignment file. |
https://github.com/longbow0/cwl.git
Path: v1.8/rhapsody_targeted_1.8.cwl Branch/Commit ID: master Packed ID: main |
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Unaligned BAM to BQSR and VCF
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https://github.com/genome/cancer-genomics-workflow.git
Path: unaligned_bam_to_bqsr/workflow.cwl Branch/Commit ID: toil_compatibility |
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host_process.cwl
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https://github.com/azzaea/tsts.git
Path: cwl/host_process.cwl Branch/Commit ID: master |
