Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/Barski-lab/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: 8587882f145d3eb8e258e7bf819a94f8dd666dbf
workflow graph psortedDefaultParams.cwl

https://github.com/hubmapconsortium/spatial-transcriptomics-pipeline.git

Path: steps/psortedDefaultParams.cwl

Branch/Commit ID: 6ef7a6399b2ab55c1d3edd4e37631a8234889fd9
workflow graph step_valuefrom5_wf_with_id_v1_0.cwl

https://github.com/common-workflow-language/cwl-utils.git

Path: testdata/step_valuefrom5_wf_with_id_v1_0.cwl

Branch/Commit ID: 917a880e3a48c2ea7da10aeae20f9a03fb1c6a62
workflow graph harmonization_bwa_mem.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_bwa_mem.cwl

Branch/Commit ID: a83f16e804bc36a2823e32fa2fb649ebe2e05f4c
workflow graph SoupX (workflow) - an R package for the estimation and removal of cell free mRNA contamination

Wrapped in a workflow SoupX tool for easy access to Cell Ranger pipeline compressed outputs.

https://github.com/Barski-lab/workflows.git

Path: tools/soupx-subworkflow.cwl

Branch/Commit ID: c4759ed88dcd40e96067685a345488414b6f88fb
workflow graph filter-pcr-artifacts.cwl

DNase-seq - map - Filter PCR Artifacts

 https://github.com/Duke-GCB/GGR-cwl.git

Path: v1.0/map/filter-pcr-artifacts.cwl

Branch/Commit ID: 7696e7eb27a9251fba53ef4ccacc84cc8f8b0685
workflow graph env-wf1.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/v1.0/env-wf1.cwl

Branch/Commit ID: a0f7d43bbc706af2a844be93fc19b2e4e4da626c
workflow graph realignment.cwl

https://github.com/mskcc/roslin-variant.git

Path: setup/cwl/modules/realignment.cwl

Branch/Commit ID: 75010576d1cd99d6e3572e32fd2dabbb0f1bb8f3
workflow graph ATAC.cwl

https://github.com/common-workflow-lab/wdl-cwl-translator.git

Path: wdl2cwl/tests/cwl_files/ATAC.cwl

Branch/Commit ID: f1fc33cf4aba1f3d777615030aa305a170d9f509
workflow graph haplotypecaller.cwl

https://github.com/ddbj/jga-analysis.git

Path: per-sample/Workflows/haplotypecaller.cwl

Branch/Commit ID: 22a56d63bd3e05f484032b686d074cc15e3aeed0