Explore Workflows
View already parsed workflows here or click here to add your own
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scatter-valuefrom-wf5.cwl
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Path: tests/scatter-valuefrom-wf5.cwl Branch/Commit ID: master |
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count-lines1-wf.cwl
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Path: tests/count-lines1-wf.cwl Branch/Commit ID: master |
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transcoding-workflow.cwl
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Path: cwl-scripts/transcoder/transcoding-workflow.cwl Branch/Commit ID: master |
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qiime2 create phylogenetic tree
Generate a tree for phylogenetic diversity analyses from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-05-phylogeny.cwl |
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qiime2 explore sample taxonomic composition
Taxonomic analysis from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/ |
Path: packed/qiime2-step2-dada2.cwl Branch/Commit ID: qiime2-workflow-paired Packed ID: qiime2-08-taxonomic-analysis.cwl |
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wf.cwl#SplitAndSubsample.cwl
SplitAndSubsample splits, subsamples and formats read files to be deposited in QualityFilter. |
Path: wf.cwl Branch/Commit ID: main Packed ID: SplitAndSubsample.cwl |
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ST520116.cwl
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Path: ST520116.cwl Branch/Commit ID: main |
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workflow.cwl
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Path: flow_dispatch/2other_species/workflow.cwl Branch/Commit ID: master |
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samples_fillout_index_batch_workflow.cwl
Wrapper to run bam indexing on all bams before submitting for samples fillout Also includes steps to pre-filter some maf input files NOTE: each sample in a sample_group must have a .bam file, and there must be a minumum of 1 .maf file amoungst samples in the same sample_group this means that for each sample in the sample_group, a .bam is required but a .maf is optional as long as one sample in the group has a .maf this also means that singleton sample groups, or a sample group with only one sample, MUST include a .maf file; singletons cannot lack a .maf NOTE: all .maf files must be valid, at a minimum they must have a header and at least one variant if a sample has no variants in its .maf file, or has an empty .maf file, then it should NOT have a maf_file entry associated with it |
Path: cwl/samples_fillout_index_batch_workflow.cwl Branch/Commit ID: master |
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scatter-wf2.cwl
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Path: v1.0/v1.0/scatter-wf2.cwl Branch/Commit ID: master |
