Explore Workflows

https://github.com/proteinswebteam/ebi-metagenomics-cwl.git

Path: tools/tRNA_selection.cwl

Branch/Commit ID: 9c57dba558a4e04a1884eae1df8431dcaccafc1e

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/readgroup_fastq_pe.cwl

Branch/Commit ID: f34d3963b33e0a379338cb3cb75b0016f012bf2c

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/alignment_prep.cwl

Branch/Commit ID: f83b0e3d2ab7a29a0425bf25b5bae68c3dc70999

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/default-dir5.cwl

Branch/Commit ID: f8f24046875aa90764cf54736df926363aa326d1

Input is a fasta file with n>1 samples, with sample id as sequence identifier prefix, and a sample id file. The workflow calls open otus and assigns taxa using greengenes. The output are taxa plots.

https://github.com/MG-RAST/qiime-pipeline.git

Path: CWL/Workflows/qiime/join-reads2plot.cwl

Branch/Commit ID: 7b41239284b265bc62748e6112586471dba62e3c

https://github.com/nal-i5k/organism_onboarding.git

Path: flow_create_readme/readme-assembly-workflow.cwl

Branch/Commit ID: 0ecf492419ddaa015f14a163381948c53b3deea6

QIIME2 DADA2, feature summaries, phylogenetic diversity tree, taxonomic analysis and ancom

https://github.com/duke-gcb/bespin-cwl.git

Path: packed/qiime2-step2-dada2.cwl

Branch/Commit ID: e2dc95d4f12210359360d814382e7201d836dfcf

Packed ID: main

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 441b85003fdc10cf4cbf333d89acb4d23b0fef32

https://github.com/NCI-GDC/gdc-rnaseq-cwl.git

Path: rnaseq-star-align/subworkflows/preprocessing/input_bam_processing_workflow.cwl

Branch/Commit ID: 81605548d21d346bce82272dcc00ff456db7ef19

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/bisulfite.cwl

Branch/Commit ID: 68eda647259849ca81ac0bb07a24bc8a4465a630