Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_cache_retrieve
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_retrieve.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d |
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umi per-lane alignment subworkflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/umi_alignment.cwl Branch/Commit ID: 88f1e02b261bf9ce882eba306b6245c64328632b |
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wgs alignment and tumor-only variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/wgs.cwl Branch/Commit ID: 5c4125344b1b9125ad04d7e768ecc99901570a7a |
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extract_gencoll_ids
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https://github.com/ncbi/pgap.git
Path: task_types/tt_extract_gencoll_ids.cwl Branch/Commit ID: 8e00678051e8e11fe2798175401bce04c7eeef19 |
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step-valuefrom3-wf_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step-valuefrom3-wf_v1_1.cwl Branch/Commit ID: 18a3e768e1eda9bdc63d73ff8336a342e04e7a63 |
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PGAP Pipeline, simple user input, GP-24057
PGAP pipeline for external usage, powered via Docker containers, simple user input: (FASTA + yaml only, no template) |
https://github.com/ncbi-gpipe/pgap.git
Path: wf_pgap_simple2.cwl Branch/Commit ID: c08fd46e8f715b9b5aa487466705863e4b1829df |
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tt_kmer_compare_wnode
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_compare_wnode.cwl Branch/Commit ID: 7e3e1cb249e85285e27ef3ebd4104965f835241d |
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mutect parallel workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/mutect.cwl Branch/Commit ID: 3c7a6e39d956ca065751f23ee0316ac3f3306d9a |
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FASTQ to BQSR
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/fastq_to_bqsr.cwl Branch/Commit ID: 93656ed6582073e434eab168c610625a835dce37 |
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varscan somatic workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan.cwl Branch/Commit ID: 3c7a6e39d956ca065751f23ee0316ac3f3306d9a |
