Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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kmer_build_tree
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_build_tree.cwl Branch/Commit ID: 49732e54e2fe2eafd2f82df3c482c73e642f6d64 |
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Varscan Workflow
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/varscan_germline.cwl Branch/Commit ID: 25aa4788dd4efb1cc8ed6f609cb7803896e4d28d |
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Workflow to run pVACseq from detect_variants and rnaseq pipeline outputs
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/pvacseq.cwl Branch/Commit ID: 25aa4788dd4efb1cc8ed6f609cb7803896e4d28d |
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align_merge_sas
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https://github.com/ncbi/pgap.git
Path: task_types/tt_align_merge_sas.cwl Branch/Commit ID: c6e7e18969c761803c38762ad6ee91b0001c52e2 |
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search.cwl#main
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https://github.com/common-workflow-language/cwl-v1.1.git
Path: tests/search.cwl Branch/Commit ID: 86c46cb397de029e4c91f02cca40fa2b54d22f37 Packed ID: main |
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env-wf2.cwl
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/env-wf2.cwl Branch/Commit ID: 203797516329f7fb8aa5e763e6f9b331c63c3060 |
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trim-chipseq-se.cwl
Runs ChIP-Seq BioWardrobe basic analysis with single-end data file. |
https://github.com/Barski-lab/workflows.git
Path: workflows/trim-chipseq-se.cwl Branch/Commit ID: dc4ee45ed2c5c30e9a1a173c9ea4445f27d3788a |
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wf-loadContents2.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/wf-loadContents2.cwl Branch/Commit ID: 57baec040c99d7edef8242ef51b5470b1c82d733 |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/Barski-lab/workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: a84cefded73e7c864ee2b6c7ab0604a0397462ec |
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js-expr-req-wf.cwl#wf
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https://github.com/common-workflow-language/cwltool.git
Path: cwltool/schemas/v1.0/v1.0/js-expr-req-wf.cwl Branch/Commit ID: 49cd284a8fc7884de763573075d3e1d6a4c1ffdd Packed ID: wf |
