Explore Workflows
View already parsed workflows here or click here to add your own
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SoupX - an R package for the estimation and removal of cell free mRNA contamination
Devel version of Single-Cell Advanced Cell Ranger Pipeline (SoupX) ================================================================= |
https://github.com/datirium/workflows.git
Path: workflows/soupx.cwl Branch/Commit ID: 7ced5a5259dbd8b3fc64456beaeffd44f4a24081 |
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count-lines7-single-source-wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/count-lines7-single-source-wf_v1_0.cwl Branch/Commit ID: c1875d54dedc41b1d2fa08634dcf1caa8f1bc631 |
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timelimit2-wf.cwl
The entire test should take ~24 seconds. Test that the 20 second time limit applies to each step individually (so 1st step has 20 seconds and the 2nd step has 20 seconds). So this 20 second time limit should not cause the workflow to fail. The timing on this test was updated from shorter values to accommodate the startup time of certain container runners, the previous timelimit of 5 seconds was too short, which is why it is now 20 seconds. |
https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/timelimit2-wf.cwl Branch/Commit ID: c7c97715b400ff2194aa29fc211d3401cea3a9bf |
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cond-wf-002_nojs.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-002_nojs.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
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count-lines7-single-source-wf_v1_1.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/count-lines7-single-source-wf_v1_1.cwl Branch/Commit ID: 0ad6983898f0d9001fe0f416f97c4d8b940e384a |
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cond-wf-006_nojs.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/conditionals/cond-wf-006_nojs.cwl Branch/Commit ID: e62f99dd79d6cb9c157cceb458f74200da84f6e9 |
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merge and annotate svs with population allele freq and vep
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https://github.com/genome/analysis-workflows.git
Path: definitions/subworkflows/merge_svs.cwl Branch/Commit ID: ec45fad68ca10fb64d5c58e704991b146dc31d28 |
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kmer_cache_store
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_cache_store.cwl Branch/Commit ID: 2afb5ebafd1353ba063cc74ee9a7eaf347afce5c |
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genome-kallisto-index.cwl
Generates a FASTA file with the DNA sequences for all transcripts in a GFF file and builds kallisto index |
https://github.com/Barski-lab/workflows.git
Path: tools/genome-kallisto-index.cwl Branch/Commit ID: a84cefded73e7c864ee2b6c7ab0604a0397462ec |
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Interval overlapping alignments counts
Interval overlapping alignments counts ====================================== Reports the count of alignments from multiple samples that overlap specific intervals. |
https://github.com/datirium/workflows.git
Path: workflows/bedtools-multicov.cwl Branch/Commit ID: 7eef0294395d83ff0765fce61726a59d71126422 |
