Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph diamond proteinworkflow

\"This workflow performs diamond protein alignment process for predicted protein sequences. It executes 2 processes: diamond index creation and diamond alignment. related CWL file: ./Tools/09_diamond_index.cwl ./Tools/11_diamond_uniprot_alignment.cwl ./Tools/11_diamond_uniprot_filter1.cwl ./Tools/11_diamond_uniprot_filter2.cwl\"

https://github.com/RyoMameda/ComplexMicrobiome_GeneExpression_CWL.git

Path: Workflow/diamond_protein_ssw.cwl

Branch/Commit ID: 1838569c1d6d3c15f58c254667d4c6258e67e5a6
workflow graph kfdrc_sentieon_alignment_wf.cwl

https://github.com/kids-first/kf-alignment-workflow.git

Path: workflows/kfdrc_sentieon_alignment_wf.cwl

Branch/Commit ID: 762c0718a7c506360423c3cb5477bd85826ea5de
workflow graph revsort_datetime.cwl

Reverse the lines in a document, then sort those lines.

 https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/revsort_datetime.cwl

Branch/Commit ID: 766d58b47180d92618074679eb9f3c6c30acf638
workflow graph nestedworkflows.cwl

https://github.com/common-workflow-language/cwltool.git

Path: cwltool/schemas/v1.0/examples/nestedworkflows.cwl

Branch/Commit ID: 216fbe57afcf67d81c99b49c1aa3aee0844f0a6a
workflow graph sc_atac_seq_prep_process_init.cwl

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: sc-atac-seq-pipeline/steps/sc_atac_seq_prep_process_init.cwl

Branch/Commit ID: 999afe5b202578ecd8e38bedf3e4788a431e6a58
workflow graph Salmon quantification, FASTQ -> H5AD count matrix

https://github.com/hubmapconsortium/salmon-rnaseq.git

Path: steps/salmon-quantification.cwl

Branch/Commit ID: 8c435d7de36b94093c776d62e1b2093b2c886ba1
workflow graph kmer_ref_compare_wnode

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_ref_compare_wnode.cwl

Branch/Commit ID: 6d04f5d65d1d4893706d9ae7e27341633333054f
workflow graph multiome pipeline using Salmon and Alevin (HuBMAP scRNA-seq pipeline) and HuBMAP scATAC-seq pipeline

https://github.com/hubmapconsortium/multiome-rna-atac-pipeline.git

Path: pipeline.cwl

Branch/Commit ID: 999afe5b202578ecd8e38bedf3e4788a431e6a58
workflow graph kmer_cache_store

https://github.com/ncbi/pgap.git

Path: task_types/tt_kmer_cache_store.cwl

Branch/Commit ID: 369afa7090a7480e6a0b144eff967a4a52b6fde2
workflow graph bam to trimmed fastqs

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/bam_to_trimmed_fastq.cwl

Branch/Commit ID: 026bba9511561246ad65458f0f55c88cead26fbd