Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph MEME motif

This workflow uses MEME suite for motif finding

 https://github.com/ncbi/cwl-ngs-workflows-cbb.git

Path: workflows/ChIP-Seq/meme-motif.cwl

Branch/Commit ID: f9447c1ac522e17531097c93a169a1a31453e874
workflow graph transform_pack.cwl#integrity.cwl

https://github.com/NCI-GDC/gdc-dnaseq-cwl.git

Path: workflows/bamfastq_align/transform_pack.cwl

Branch/Commit ID: a57b8f0d8708078e87f13297e065d72db10e38a0

Packed ID: integrity.cwl
workflow graph wgs alignment with qc

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/wgs_alignment.cwl

Branch/Commit ID: e509210450e4c62aecb99a228fc97f0eae2d9580
workflow graph harmonization_novoalign.cwl

https://github.com/uc-cdis/genomel_pipelines.git

Path: genomel/cwl/workflows/harmonization/harmonization_novoalign.cwl

Branch/Commit ID: 39ddc4b79dc93076787046f591225dc7ca3100ce
workflow graph PGAP Pipeline

PGAP pipeline for external usage, powered via containers

 https://github.com/ncbi/pgap.git

Path: wf_common.cwl

Branch/Commit ID: dd53e6d71282b0619ef7123ba2d258b30aef2dd0
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: e351f650524b532f85820b8e53855010b35046c2
workflow graph qiime2 demux sequences

Demultiplexing sequences from https://docs.qiime2.org/2018.4/tutorials/moving-pictures/

 https://github.com/Duke-GCB/bespin-cwl.git

Path: packed/qiime2-step1-import-demux.cwl

Branch/Commit ID: 777dbcd05b5d115371dcda6d54ebaf75dae8afb8

Packed ID: qiime2-02-demux.cwl
workflow graph tt_hmmsearch_wnode.cwl

https://github.com/ncbi/pgap.git

Path: task_types/tt_hmmsearch_wnode.cwl

Branch/Commit ID: 2a81fcde75ca7665814c8de2210c7bc3121a08a3
workflow graph exome alignment and tumor-only variant detection

https://github.com/genome/analysis-workflows.git

Path: definitions/pipelines/tumor_only_exome.cwl

Branch/Commit ID: c23dc7f113ca0b0a3127a5d6c696e98d4799460c
workflow graph umi molecular alignment workflow

https://github.com/genome/analysis-workflows.git

Path: definitions/subworkflows/molecular_qc.cwl

Branch/Commit ID: 60edaf6f57eaaf02cda1a3d8cb9a825aa64a43e2