Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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mutect parallel workflow
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https://github.com/hamid58b/cancer-genomics-workflow.git
Path: mutect/workflow.cwl Branch/Commit ID: master |
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hello_world.cwl
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https://github.com/dockstore/hello_world.git
Path: hello_world.cwl Branch/Commit ID: 1.03 |
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dlr-s2-preproc.0.0.1.4-application.cwl#main
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https://gitlab.com/ellip-ogc-eo-apps/cwl.git
Path: fan-out/stage-in/dlr-s2-preproc.0.0.1.4-application.cwl Branch/Commit ID: master Packed ID: main |
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hi-c-processing-parta-juicer.cwl
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https://github.com/mr-c/4dn-dcic-pipelines-cwl.git
Path: cwl_awsem_v1/hi-c-processing-parta-juicer.cwl Branch/Commit ID: master |
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04-quantification-se-revstranded.cwl
RNA-seq 04 quantification |
https://github.com/Duke-GCB/GGR-cwl.git
Path: v1.0/RNA-seq_pipeline/04-quantification-se-revstranded.cwl Branch/Commit ID: master |
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emblem_textures.cwl
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https://gitlab.com/unduthegun/stellaris-emblem-lab.git
Path: textures/emblem_textures.cwl Branch/Commit ID: cwl |
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EMG pipeline v3.0 (paired end version)
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https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git
Path: workflows/emg-pipeline-v3-paired.cwl Branch/Commit ID: master |
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msi.cwl
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https://github.com/mskcc/Innovation-Pipeline.git
Path: workflows/subworkflows/msi.cwl Branch/Commit ID: master |
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SPRM pipeline
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https://github.com/hubmapconsortium/sprm.git
Path: pipeline.cwl Branch/Commit ID: 2ddb0ce |
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Indices builder from GBOL RDF (TTL)
Workflow to build different indices for different tools from a genome and transcriptome. This workflow expects an (annotated) genome in GBOL ttl format. Steps: - SAPP: rdf2gtf (genome fasta) - SAPP: rdf2fasta (transcripts fasta) - STAR index (Optional for Eukaryotic origin) - bowtie2 index - kallisto index |
https://git.wur.nl/unlock/cwl.git
Path: cwl/workflows/workflow_indexbuilder.cwl Branch/Commit ID: master |
