Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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pangenome-generate.cwl
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https://github.com/hpobio-lab/viral-analysis.git
Path: cwl/pangenome-generate/pangenome-generate.cwl Branch/Commit ID: master |
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wf_calculate_models.cwl
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https://github.com/idaks/cwl_modeling.git
Path: yw_cwl_modeling/yw2cwl_parser/example_sql/calculate_models/wf_calculate_models.cwl Branch/Commit ID: master |
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step-valuefrom3-wf.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/step-valuefrom3-wf.cwl Branch/Commit ID: main |
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workflow.cwl
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https://github.com/EvolutionaryGenomics/scalability-reproducibility-chapter.git
Path: CWL/workflow.cwl Branch/Commit ID: master |
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cnv_exomedepth
CNV ExomeDepth calling |
https://gitlab.bsc.es/lrodrig1/structuralvariants_poc.git
Path: structuralvariants/cwl/subworkflows/cnv_exome_depth.cwl Branch/Commit ID: 1.0.7 |
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count-lines11-extra-step-wf-noET.cwl
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https://github.com/common-workflow-language/common-workflow-language.git
Path: v1.0/v1.0/count-lines11-extra-step-wf-noET.cwl Branch/Commit ID: master |
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bam-bedgraph-bigwig.cwl
Workflow converts input BAM file into bigWig and bedGraph files. Input BAM file should be sorted by coordinates (required by `bam_to_bedgraph` step). If `split` input is not provided use true by default. Default logic is implemented in `valueFrom` field of `split` input inside `bam_to_bedgraph` step to avoid possible bug in cwltool with setting default values for workflow inputs. `scale` has higher priority over the `mapped_reads_number`. The last one is used to calculate `-scale` parameter for `bedtools genomecov` (step `bam_to_bedgraph`) only in a case when input `scale` is not provided. All logic is implemented inside `bedtools-genomecov.cwl`. `bigwig_filename` defines the output name only for generated bigWig file. `bedgraph_filename` defines the output name for generated bedGraph file and can influence on generated bigWig filename in case when `bigwig_filename` is not provided. All workflow inputs and outputs don't have `format` field to avoid format incompatibility errors when workflow is used as subworkflow. |
https://github.com/mr-c/datirium-workflows.git
Path: tools/bam-bedgraph-bigwig.cwl Branch/Commit ID: license_test |
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steplevel-resreq.cwl
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https://github.com/common-workflow-language/cwl-v1.2.git
Path: tests/steplevel-resreq.cwl Branch/Commit ID: main |
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pipeline.cwl
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https://github.com/hubmapconsortium/azimuth-annotate.git
Path: pipeline.cwl Branch/Commit ID: 94520dc |
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oxog_sub_wf.cwl
This is a subworkflow of the main oxog_varbam_annotat_wf workflow - this is not meant to be run as a stand-alone workflow! |
https://github.com/svonworl/oxog-dockstore-tools.git
Path: oxog_sub_wf.cwl Branch/Commit ID: master |
