Explore Workflows

View already parsed workflows here or click here to add your own

Graph Name Retrieved From View
workflow graph workflow.cwl

https://github.com/mr-c/cwltests.git

Path: cwl/workflow.cwl

Branch/Commit ID: pack_test
workflow graph sec-wf.cwl

https://github.com/common-workflow-language/cwltool.git

Path: tests/wf/sec-wf.cwl

Branch/Commit ID: main
workflow graph workflow1_11.cwl#UncompressDatatables.cwl

https://github.com/GeorgeAlehandro/cwl_1_11.git

Path: workflow1_11.cwl

Branch/Commit ID: main

Packed ID: UncompressDatatables.cwl
workflow graph cgpRna_workflow.cwl

https://github.com/cancerit/cgpRna.git

Path: cwls/cgpRna_workflow.cwl

Branch/Commit ID: ad389b843b2944245f5442b65fb3c684829b8c5d
workflow graph host.sort.workflow.cwl

https://github.com/azzaea/tsts.git

Path: cwl/host.sort.workflow.cwl

Branch/Commit ID: master
workflow graph collate_unique_SSU_headers.cwl

https://github.com/ProteinsWebTeam/ebi-metagenomics-cwl.git

Path: tools/collate_unique_SSU_headers.cwl

Branch/Commit ID: fa86fce
workflow graph somatic_exome: exome alignment and somatic variant detection

somatic_exome is designed to perform processing of mutant/wildtype H.sapiens exome sequencing data. It features BQSR corrected alignments, 4 caller variant detection, and vep style annotations. Structural variants are detected via manta and cnvkit. In addition QC metrics are run, including somalier concordance metrics. example input file = analysis_workflows/example_data/somatic_exome.yaml

https://github.com/tmooney/cancer-genomics-workflow.git

Path: definitions/pipelines/somatic_exome.cwl

Branch/Commit ID: downsample_and_recall
workflow graph LodSeq

LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file.

https://github.com/CNRGH/WMS-benchmark.git

Path: workflows/cwltoil/lodseq.cwl

Branch/Commit ID: master
workflow graph md5sum-workflow.cwl

https://github.com/dockstore-testing/md5sum-checker.git

Path: md5sum/md5sum-workflow.cwl

Branch/Commit ID: master
workflow graph chksum_for_corrupted_files.cwl

https://github.com/cancerit/workflow-seq-import.git

Path: cwls/chksum_for_corrupted_files.cwl

Branch/Commit ID: 0.5.0_test