Explore Workflows
View already parsed workflows here or click here to add your own
| Graph | Name | Retrieved From | View |
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tt_hmmsearch_wnode.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_hmmsearch_wnode.cwl Branch/Commit ID: efe2b9b032560e00269e06668b3aca56936ec291 |
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tt_kmer_top_n.cwl
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https://github.com/ncbi/pgap.git
Path: task_types/tt_kmer_top_n.cwl Branch/Commit ID: 01a5c0a8834846ce04fed190eec7d1cc39a3df48 |
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heatmap-prepare.cwl
Workflow runs homer-make-tag-directory.cwl tool using scatter for the following inputs - bam_file - fragment_size - total_reads `dotproduct` is used as a `scatterMethod`, so one element will be taken from each array to construct each job: 1) bam_file[0] fragment_size[0] total_reads[0] 2) bam_file[1] fragment_size[1] total_reads[1] ... N) bam_file[N] fragment_size[N] total_reads[N] `bam_file`, `fragment_size` and `total_reads` arrays should have the identical order. |
https://github.com/Barski-lab/workflows.git
Path: tools/heatmap-prepare.cwl Branch/Commit ID: 5a92b026bd62fe1597de940088e8adeef6939d5a |
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exome alignment and somatic variant detection
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https://github.com/genome/analysis-workflows.git
Path: definitions/pipelines/somatic_exome.cwl Branch/Commit ID: 37a3622d1d03812e4f868b5024c52607696bfb75 |
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bact_get_kmer_reference
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https://github.com/ncbi/pgap.git
Path: task_types/tt_bact_get_kmer_reference.cwl Branch/Commit ID: 8c21035bff3cbffccf5682bd0357a6d71f3bdb81 |
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Bacterial Annotation, pass 2, blastp-based functional annotation (first pass)
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https://github.com/ncbi/pgap.git
Path: bacterial_annot/wf_bacterial_annot_pass2.cwl Branch/Commit ID: a1f39f21670be28427ceb91ceaeb9339545c18fc |
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run-one.cwl
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https://github.com/hubmapconsortium/hra-workflows.git
Path: steps/run-one.cwl Branch/Commit ID: 092373445cddc0799ce3ba15c9b609e2df86552f |
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step_valuefrom5_wf_v1_0.cwl
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https://github.com/common-workflow-language/cwl-utils.git
Path: testdata/step_valuefrom5_wf_v1_0.cwl Branch/Commit ID: 513bf79c9e3ba98306006a87165de18bac7c04ee |
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project-workflow-sv.cwl
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https://github.com/mskcc/argos-cwl.git
Path: project-workflow-sv.cwl Branch/Commit ID: eb1c641d3134e7e13bc1a15fe7d8de7937527aca |
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filter_alignment_artifacts.cwl
GATK4.1.2 Alignment artifacts filtration workflow |
https://github.com/nci-gdc/gatk4_mutect2_cwl.git
Path: subworkflows/filter_alignment_artifacts.cwl Branch/Commit ID: 02129060b3a92f90daf1328f21b9db49da7a5aca |
